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syntheticgio

ncbi-datasets-mcp

by syntheticgio

genome_summary_by_accession

Retrieve genome assembly metadata by providing RefSeq or GenBank accession numbers. Get assembly details for one or more accessions.

Instructions

Retrieve genome assembly metadata for one or more NCBI accessions.

Args: accessions: RefSeq or GenBank assembly accessions (e.g. ["GCF_000001405.40", "GCA_000001405.29"])

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
accessionsYes

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, and the description does not disclose behavioral traits such as being read-only, idempotent, or any side effects. For a retrieval tool, this is a significant gap.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two short paragraphs, no unnecessary words. The description is efficient and front-loaded with the core purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Adequate but lacks mention of potential limits (e.g., maximum number of accessions) or pagination. With an output schema present, return value explanation is not needed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description adds value by specifying that accessions are 'RefSeq or GenBank assembly accessions' and provides examples. With 0% schema coverage, this compensates well, though it could be more explicit about format constraints.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'retrieve' and the resource 'genome assembly metadata' for 'NCBI accessions', distinguishing it from siblings like genome_download_by_accession or genome_summary_by_taxon.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives. It does not specify when not to use or provide context for selection among sibling tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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