genome_download_by_taxon
Download genome assemblies for a given taxon by name or ID, optionally limiting to reference genomes or using dehydrated packages for large datasets.
Instructions
Download genome data packages for assemblies matching a taxon.
For taxa with many assemblies, use dehydrated=True first, then call rehydrate_genome_package to fetch only the data you need.
Args: taxon: Taxon name or NCBI tax ID include: Data types — genome, rna, protein, cds, gff3, gbff, seq-report output_dir: Directory for the download dehydrated: Download a dehydrated package (recommended for large taxa) reference_only: Download only the reference/representative genome
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| taxon | Yes | ||
| include | No | ||
| output_dir | No | ||
| dehydrated | No | ||
| reference_only | No |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||