genome_download_by_accession
Download genome data packages for one or more assembly accessions. Returns the local path to the downloaded ZIP file, with options to select data types like genome, RNA, and annotations.
Instructions
Download a genome data package for one or more assembly accessions.
Returns the local path to the downloaded ZIP file.
Args: accessions: RefSeq/GenBank assembly accessions include: Data types — genome, rna, protein, cds, gff3, gbff, seq-report. Defaults to ["genome"]. output_dir: Directory for the download. Uses NCBI_DOWNLOAD_DIR if omitted. dehydrated: Download a lightweight dehydrated package (use rehydrate_genome_package to fetch the actual sequence files).
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| accessions | Yes | ||
| include | No | ||
| output_dir | No | ||
| dehydrated | No |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||