find_active_site
Extract detailed information about specific residues, such as active site, from a PDB file by providing residue numbers and an optional chain identifier.
Instructions
Extract information about specific residues (e.g., active site).
Args: pdb_file: Path to PDB file residue_numbers: List of residue numbers to analyze chain_id: Chain identifier (default: 'A')
Returns: Dictionary containing active site residue information
Tool call template
Replace each placeholder with a value matching the input schema. Only required parameters are included; add optional parameters as needed.
{
"id": 1,
"jsonrpc": "2.0",
"method": "tools/call",
"params": {
"arguments": {
"pdb_file": "<pdb_file>",
"residue_numbers": "<residue_numbers>"
},
"name": "find_active_site"
}
}Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| pdb_file | Yes | ||
| residue_numbers | Yes | ||
| chain_id | No | A |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||