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kmaneesh

BioPython MCP Server

by kmaneesh
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Python
Hybrid

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    Deploy Server
    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    TDQS

    B3.4/5.0

    Scored across 32 tools

    Disambiguation3/5

    There is some overlap between tools, particularly with multiple PubMed search functions (search_pubmed and pubmed_search) and the generic entrez_search also able to search PubMed. Other tools are largely distinct, but the redundancy creates potential confusion for an agent selecting the appropriate tool.

    Naming Consistency4/5

    Most tools follow a verb_noun pattern (e.g., calculate_gc_content, fetch_uniprot), but a few deviate like reverse_complement (verb_object) and clinvar_variant_lookup (object_action). Overall naming is clear and mostly consistent.

    Tool Count2/5

    With 32 tools covering multiple subdomains (sequence analysis, alignment, phylogenetics, NCBI, structure, literature), the tool count is high for a single MCP server. This breadth suggests the server could be split into more focused servers for better manageability and clarity.

    Completeness3/5

    The toolset covers a wide range of bioinformatics tasks, but there are notable gaps such as missing tools for sequence format conversion, codon usage analysis, or comprehensive structural analysis. Additionally, the multiple_sequence_alignment tool is noted as a placeholder, indicating incomplete implementation.

    Maintenance

    ActivityInactive
    ResponsivenessNo issues

    Resources