Skip to main content
Glama
Sign In
BioPython MCP Server

BioPython MCP Server

by kmaneesh
OverviewSchemaSourceRelated ServersDiscussionsAdmin
Python
Hybrid

Related Servers

Alternatives to BioPython MCP Server

No user-submitted related servers found.

    Related Servers

    • BioMCP

      acashmoney
      A
      license
      B
      quality
      D
      maintenance
      A Model Context Protocol server that enhances language models with protein structure analysis capabilities, enabling detailed active site analysis and disease-related protein searches through established protein databases.
      2
      20
      ISC

    • BioMCP

      genomoncology
      A
      license
      A
      quality
      A
      maintenance
      Provides LLMs with structured access to critical biomedical databases including PubTator3 (PubMed/PMC), ClinicalTrials.gov, and MyVariant.info through the Model Context Protocol.
      46
      35
      765 PyPI
      674
      MIT

    • biotools-mcp

      madhusudan-kulkarni
      A
      license
      A
      quality
      B
      maintenance
      MCP server offering verified bioinformatics tools for sequence utilities and statistics, backed by BioPython/scipy. Enables AI agents to perform accurate GC content, translation, ORF finding, motif scanning, and statistical tests through natural language.
      11
      MIT

    • mcp-alphafold

      zeinab-sheikhi
      F
      license
      B
      quality
      D
      maintenance
      Provides programmatic access to AlphaFold protein structure predictions and UniProt data, enabling users to retrieve protein structures, summaries, and annotations through natural language.
      3
      -

    • PubMed MCP Server

      chrismannina
      A
      license
      B
      quality
      D
      maintenance
      A comprehensive Model Context Protocol server that enables advanced PubMed literature search, citation formatting, and research analysis through natural language interactions.
      12
      10
      MIT

    • MCPymol

      chemrich
      A
      license
      C
      quality
      B
      maintenance
      A Model Context Protocol server that lets you drive PyMOL with natural language, enabling structure loading, analytical views, measurements, and protein exploration through AI assistants.
      135
      134 PyPI
      16
      MIT
    Deploy Server
    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    TDQS

    B3.4/5.0

    Scored across 32 tools

    Disambiguation3/5

    There is some overlap between tools, particularly with multiple PubMed search functions (search_pubmed and pubmed_search) and the generic entrez_search also able to search PubMed. Other tools are largely distinct, but the redundancy creates potential confusion for an agent selecting the appropriate tool.

    Naming Consistency4/5

    Most tools follow a verb_noun pattern (e.g., calculate_gc_content, fetch_uniprot), but a few deviate like reverse_complement (verb_object) and clinvar_variant_lookup (object_action). Overall naming is clear and mostly consistent.

    Tool Count2/5

    With 32 tools covering multiple subdomains (sequence analysis, alignment, phylogenetics, NCBI, structure, literature), the tool count is high for a single MCP server. This breadth suggests the server could be split into more focused servers for better manageability and clarity.

    Completeness3/5

    The toolset covers a wide range of bioinformatics tasks, but there are notable gaps such as missing tools for sequence format conversion, codon usage analysis, or comprehensive structural analysis. Additionally, the multiple_sequence_alignment tool is noted as a placeholder, indicating incomplete implementation.

    Maintenance

    ActivityInactive
    ResponsivenessNo recent community issues

    Resources