fetch_pdb_structure
Retrieve protein structure data from the Protein Data Bank using a PDB identifier and optional file format. Returns structure information and file location.
Instructions
Fetch a protein structure from the PDB database.
Args: pdb_id: PDB identifier (e.g., '1ABC') file_format: File format - 'pdb' or 'cif' (default: 'pdb')
Returns: Dictionary containing structure information and file location
Tool call template
Replace each placeholder with a value matching the input schema. Only required parameters are included; add optional parameters as needed.
{
"id": 1,
"jsonrpc": "2.0",
"method": "tools/call",
"params": {
"arguments": {
"pdb_id": "<pdb_id>"
},
"name": "fetch_pdb_structure"
}
}Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| pdb_id | Yes | ||
| file_format | No | pdb |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||