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get_similar_ligands_api_compound_similarity__hetcode__get

Read-only

Given a hetcode, find similar chemical components including stereoisomers, common scaffolds, and molecules with ≥60% PARITY score similarity.

Instructions

Returns chemical components that are similar to the given chemical component. Results include stereoisomers, components sharing a common scaffold, and molecules with ≥60% PARITY score-based similarity.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
hetcodeYesHetcode for the compound title: Hetcode description: Hetcode for the compound
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations declare readOnlyHint=true, confirming it's read-only. The description adds value by disclosing criteria (stereoisomers, common scaffold, ≥60% PARITY) and does not contradict annotations. No side effects or auth needs noted, but acceptable for a read operation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single sentence that front-loads the core purpose without any superfluous words. Every element earns its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

No output schema exists, so the description should explain return structure. It states results include certain categories but does not specify whether a list or single object is returned, nor the fields within results. Adequate but incomplete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, but the schema's own parameter description is tautological ('Hetcode for the compound'). The tool description does not add any further parameter semantics beyond what the schema provides, so baseline 3 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it returns similar chemical components and specifies similarity criteria (stereoisomers, common scaffold, ≥60% PARITY). However, it does not explicitly contrast with sibling tools (e.g., get_compound_in_pdb) to fully distinguish.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for finding similar compounds but provides no explicit when-to-use or when-not-to-use guidance compared to alternatives. Usage is inferred from the purpose.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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