Skip to main content
Glama
PDBeurope

PDBe MCP Servers

Official
by PDBeurope

get_rfam_pdb_api_nucleic_mappings__accession__get

Read-only

Get PDB entries and RNA chains mapped to a specified Rfam accession, including the matched regions.

Instructions

This call returns all PDB entries and RNA chains that map to the specified Rfam accession, including the matched regions.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
accessionYesRfam accession or PDB ID type: string title: Accession description: Rfam accession or PDB ID
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true and destructiveHint=false, so the agent knows it's a safe read operation. The description adds that it returns all entries and includes matched regions. However, no details about pagination, limits, or response format are provided, which limits transparency.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, front-loaded sentence that efficiently conveys the tool's purpose. Every word adds value, with no fluff or repetition.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple tool with one parameter and no output schema, the description covers the essential purpose. However, it does not describe the output structure or any limitations (e.g., pagination). This leaves minor gaps in completeness.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100%: the input schema describes 'accession' as 'Rfam accession or PDB ID'. The description simply refers to 'specified Rfam accession' without adding new meaning. The baseline of 3 is appropriate since schema already documents the parameter.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose: 'returns all PDB entries and RNA chains that map to the specified Rfam accession'. This is a specific verb ('returns') and resource ('PDB entries and RNA chains'), and it distinguishes from sibling tools that deal with other types of mappings or PDB data.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description does not explicitly state when to use this tool versus alternatives. It implies usage for retrieving nucleic acid mappings from Rfam, but no exclusions or alternative tools are mentioned. Among many sibling tools, the name and description help, but explicit guidance is lacking.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/PDBeurope/PDBe-MCP-Servers'

If you have feedback or need assistance with the MCP directory API, please join our Discord server