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Biomart MCP

list_datasets

Retrieve all available datasets from a specified biomart in CSV format, including names and descriptions, to explore biological data efficiently.

Instructions

Lists all available biomart datasets for a given mart. Each mart contains multiple datasets. This function returns all datasets available in the specified mart as a CSV string. Args: mart (str): The mart identifier to list datasets from. Valid values include: ENSEMBL_MART_ENSEMBL, ENSEMBL_MART_MOUSE, ENSEMBL_MART_ONTOLOGY, ENSEMBL_MART_GENOMIC, ENSEMBL_MART_SNP, ENSEMBL_MART_FUNCGEN Returns: str: CSV-formatted table of all datasets with their display names and descriptions. Example: list_datasets("ENSEMBL_MART_ENSEMBL") >>> "name,display_name,description hsapiens_gene_ensembl,Human genes,Human genes (GRCh38.p13) mmusculus_gene_ensembl,Mouse genes,Mouse genes (GRCm39) ..."

Input Schema

NameRequiredDescriptionDefault
martYes

Input Schema (JSON Schema)

{ "properties": { "mart": { "title": "Mart", "type": "string" } }, "required": [ "mart" ], "title": "list_datasetsArguments", "type": "object" }

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