AlphaFold MCP Server

MIT License

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get_confidence_scores

Retrieve per-residue confidence scores for protein structure predictions using a UniProt ID. Optionally set a threshold to filter results based on confidence levels (0-100).

Instructions

Get per-residue confidence scores for a structure prediction

Input Schema

Name	Required	Description	Default
`threshold`	No	Confidence threshold (0-100, optional)
`uniprotId`	Yes	UniProt accession

Input Schema (JSON Schema)

{
  "properties": {
    "threshold": {
      "description": "Confidence threshold (0-100, optional)",
      "maximum": 100,
      "minimum": 0,
      "type": "number"
    },
    "uniprotId": {
      "description": "UniProt accession",
      "type": "string"
    }
  },
  "required": [
    "uniprotId"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

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