AlphaFold MCP Server

MIT License

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find_similar_structures

Identify AlphaFold protein structures similar to a specified UniProt accession, with optional organism filtering, using this MCP server tool.

Instructions

Find AlphaFold structures similar to a given protein

Input Schema

Name	Required	Description	Default
`organism`	No	Filter by organism (optional)
`uniprotId`	Yes	Reference UniProt accession

Input Schema (JSON Schema)

{
  "properties": {
    "organism": {
      "description": "Filter by organism (optional)",
      "type": "string"
    },
    "uniprotId": {
      "description": "Reference UniProt accession",
      "type": "string"
    }
  },
  "required": [
    "uniprotId"
  ],
  "type": "object"
}

MCP directory API

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