"A tool that can connect to MySQL database, understand table structure and query related data" matching MCP connectors:
GET /v1/connectors — MCP directory API referenceMatching Connector Tools:
Helena Bioinformatics MCP for clinical variant interpretation, ACMG/AMP evidence and literature.
Deterministic peptide reconstitution and dosing math, so assistants compute it instead of guessing.
PK serum simulation, reconstitution math and compound data for agents. Paid tools $0.01 via x402.
Look up allele frequencies by ancestry, gene constraint, variants, and coverage over gnomAD.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Search biomedical papers, inspect publication records, and traverse citation or semantic graphs.
Search GBIF species taxonomy, occurrence records, datasets, and publishers.
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
UniProt MCP — protein sequence + function database.
Search and resolve Naturepedia, Robbie's Razor, and GC-MRD-v2.0 canonical resources.
ChEMBL MCP — drug discovery database (EBI).
WikiPathways MCP — open community pathway database.
Broad Institute gnomAD genomic variant database (GraphQL)
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
Query CAN-IMMUNE: cancer neoantigen mutations, peptides, cell lines, MHC-I binding. Read-only.
Reactome biological pathway database
IntAct (EBI) molecular-interaction database MCP. Keyless.
