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"Tools and methods for editing and organizing YAML files" matching MCP servers:

  • methods-mcp

    webwebb56
    A
    license
    Not graded
    quality
    D
    maintenance
    Provides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.
    Apache 2.0

  • whed-tools

    Dasistaiden
    F
    license
    Not graded
    quality
    D
    maintenance
    An MCP-native pipeline for collecting structured intelligence on higher education institutions using the WHED schema, enabling scraping, extraction, validation, and saving of profiles.

  • notebook-tools-mcp

    tony-zhelonkin
    A
    license
    Not graded
    quality
    D
    maintenance
    MCP server for Jupyter notebook navigation and editing. Reads .ipynb files directly as JSON, providing efficient tools for reading, searching, and modifying cells without needing a Jupyter server.
    MIT

  • Thinking Tools

    PranayMahendrakar
    A
    license
    Not graded
    quality
    C
    maintenance
    Provides five rigorous reasoning protocols (debate, red team, audit_argument, threat_model, check_study) that run on the AI you're already using, requiring no extra API keys or costs.
    MIT

  • Graph-Tools

    dromologue
    F
    license
    Not graded
    quality
    D
    maintenance
    Provides tools for AI-powered graph analysis, including relationship extraction, adjacency matrix creation, and network centrality calculations. It enables users to perform complex structural analysis and generate interactive D3.js visualizations from structured data.

  • MCP Financial Tools

    huntbuilds
    A
    license
    A
    quality
    D
    maintenance
    Provides actionable financial intelligence tools for AI agents including insider buying signals, earnings IV plays, market pulse, stock analysis, and options strategies via free public data sources.
    6
    MIT

  • Scientific Tools MCP Server

    shomechakraborty
    F
    license
    A
    quality
    D
    maintenance
    High-value scientific tools for AI agents — literature search (PubMed, arXiv, Semantic Scholar), chemical compound lookup (PubChem, ChEMBL), patent prior art search (USPTO, EPO), GPU spot prices across 4 providers, and real-time earth science data (USGS, NASA, OpenAQ). Per-call billing via API key. Keys issued instantly at https://mcp-site.com/keys/request
    6

  • Finance Tools MCP

    VoxLink-org
    A
    license
    B
    quality
    D
    maintenance
    An MCP server that provides comprehensive financial insights and analysis by leveraging real-time market data, news, and advanced analytics for stocks, options, financial statements, and economic indicators.
    17
    50
    Python
    MIT

  • cnnfag

    wildsurfer
    A
    license
    Not graded
    quality
    A
    maintenance
    CNN's Fear & Greed index for the US stock market: current score and rating, the seven component indicators, and about a year of daily history. Go standard library only, no API key required.
    2
    MIT

  • prismAId

    open-and-sustainable
    A
    license
    Not graded
    quality
    A
    maintenance
    MCP server that enables AI assistants to drive systematic literature review workflows, including screening, downloading, converting, and reviewing papers through natural language conversation.
    27
    AGPL 3.0

  • Quick Data for Windows MCP

    Beaulewis1977
    A
    license
    Not graded
    quality
    C
    maintenance
    A Windows-optimized server providing universal data analytics for JSON and CSV files through over 32 tools including schema discovery and interactive visualizations. It is specifically designed for seamless integration with Claude Desktop on Windows.
    1
    MIT