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  • Define-XML MCP Server

    defineEditor
    F
    license
    A
    quality
    D
    maintenance
    A TypeScript MCP server for interacting with CDISC Define-XML 2.0 and 2.1 files, enabling users to load, search, and retrieve clinical data metadata including datasets, variables, and codelists. It supports local file processing with document caching and provides responses in both JSON and Markdown formats.
    13

  • FTIR.fun MCP Server

    jxbaoxiaodong
    A
    license
    C
    quality
    B
    maintenance
    Enables analysis of FTIR spectra by accepting peak lists, natural-language descriptions, or base64-encoded spectrum files and returning spectral-library candidates from the FTIR.fun API.
    4
    MIT
  • sniff-mcp by Sniffscore

    sniff-mcpofficial

    Sniffscore
    A
    license
    Not graded
    quality
    B
    maintenance
    Agent-callable canine genomics API providing breed-stratified allele frequencies, pathogenicity predictions, and variant-gene-breed-disease knowledge graph for dog DNA.
    MIT
  • Bio-MCP FastQC Server by bio-mcp

    Bio-MCP FastQC Serverofficial

    bio-mcp
    A
    license
    Not graded
    quality
    D
    maintenance
    Enables AI assistants to perform quality control analysis on high-throughput sequencing data using FastQC and MultiQC. It supports single-file and batch processing of FASTQ/FASTA files and generates comprehensive, interactive summary reports.
    MIT
  • synapse-mcp by Sage-Bionetworks

    synapse-mcpofficial

    Sage-Bionetworks
    A
    license
    Not graded
    quality
    A
    maintenance
    A Model Context Protocol (MCP) server that enables AI agent access to Synapse entities such as Datasets, Projects, Folders, Files, Tables, and more.
    3
    MIT
  • snowstorm-mcp-server by IHTSDO

    snowstorm-mcp-serverofficial

    IHTSDO
    A
    license
    Not graded
    quality
    B
    maintenance
    Enables AI assistants to look up, search, validate, navigate hierarchies, and expand value sets for SNOMED CT clinical terminology through the Model Context Protocol.
    7
    Apache 2.0
  • galaxy-mcp by galaxyproject

    galaxy-mcpofficial

    galaxyproject
    A
    license
    Not graded
    quality
    A
    maintenance
    MCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.
    37
    MIT

  • MolMIM MCP Server

    siarhei-fedziukovich
    A
    license
    Not graded
    quality
    D
    maintenance
    Enables molecular generation, optimization, and analysis through NVIDIA MolMIM API. Supports generating drug-like molecules with desired properties, extracting molecular embeddings, and exploring chemical space around seed molecules.
    MIT

  • openEHR MCP Server

    deak-ai
    A
    license
    Not graded
    quality
    D
    maintenance
    Enables MCP clients like Claude Desktop to interact with openEHR REST APIs (EHRbase) for creating compositions, managing EHRs, listing templates, and executing AQL queries.
    18
    MIT

  • SNOMED CT MCP Server

    eigenbau
    A
    license
    Not graded
    quality
    D
    maintenance
    An MCP server that provides SNOMED CT clinical terminology lookup via any FHIR R4 terminology server supporting SNOMED CT and ECL. Offers tools for searching by term, fetching by code, and navigating the concept hierarchy.
    20
    Apache 2.0

  • mcp-pombase

    pipeworx-io
    A
    license
    Not graded
    quality
    C
    maintenance
    Enables AI agents to query the PomBase fission yeast model-organism database for genetic and molecular data through the Pipeworx MCP gateway.
    4
    MIT

  • semblekit

    burrows99
    A
    license
    Not graded
    quality
    B
    maintenance
    MCP server for the Semble practice-management API, enabling AI agents to search for patients, contacts, and users, as well as retrieve patient relationships via read-only tools.
    MIT

  • medical-codes-mcp-server

    cyanheads
    A
    license
    Not graded
    quality
    A
    maintenance
    Decodes, searches, validates, and crosswalks US medical codes (ICD-10-CM, ICD-10-PCS, HCPCS Level II) using an offline bundled index via MCP.
    786
    2
    Apache 2.0

  • AACT Clinical Trials MCP

    fastmcp-me
    A
    license
    Not graded
    quality
    D
    maintenance
    Enables querying clinical trial data from the AACT database (ClinicalTrials.gov) using natural language through tools like list_tables, describe_table, and read_query.
    GPL 3.0

  • string-mcp

    meringlab
    A
    license
    Not graded
    quality
    B
    maintenance
    MCP server that exposes STRING database functionality, allowing AI agents to resolve protein identifiers, retrieve interaction networks, perform homology lookups, and run functional enrichment analysis.
    5
    MIT