"The most widely used models" matching MCP servers:

An MCP server that provides direct access to PubMed and PubMed Central via the NCBI E-utilities API. It enables AI models to search biomedical literature, retrieve detailed article metadata, and download open-access full texts.

An MCP server that provides mouse genetics data from Mouse Genome Informatics (MGI), enabling LLM agents to query markers, mutations, alleles, phenotypes, and disease models.

Enables LLM-based agents to interact with FHIR healthcare data through natural language prompts, providing full CRUD operations on FHIR resources, document processing, and semantic search capabilities.

Enables editing and querying of Gene Ontology Causal Activity Models (GO-CAMs) through the Barista API. Supports model creation, individual and fact management, evidence addition, and causal pathway construction for biological knowledge representation.

Enables read-only interaction with DHIS2 health data by searching indicators and querying compact analytics results, designed for small local models.

Provides access to the Human Phenotype Ontology (HPO) API with tools for searching, browsing hierarchy, and analyzing phenotypic terms used in genetic research.

Enables the generation, mutation, and evolution of DNA and protein sequences using various evolutionary models and phylogenetic algorithms. It supports realistic next-generation sequencing read simulation and population-level evolutionary tracking for bioinformatics research and testing.

Enables language models to query a clinical relational database through a small set of validated, row-capped tools, with evaluation of answerability and data leakage.

Enables wing simulation and aerodynamic analysis for pterosaur-inspired flight models. Provides lift, drag, and thrust calculations through the pterasim module with analytical fallbacks when the native module is unavailable.

Predicts CRISPR gene dependencies and drug targets by integrating literature, regulatory/PPI networks, and genome-scale metabolic models.

Enables running avian flight dynamics simulations through the Flappy simulator. Provides typed configuration models and deterministic fallback calculations for bird flight analysis.

An MCP server for healthcare intake forms that lets AI agents import blank PDFs, create patient fill links, and retrieve completed PDFs while keeping PHI out of the model context.

Enables AI assistants to look up, search, validate, navigate hierarchies, and expand value sets for SNOMED CT clinical terminology through the Model Context Protocol.

Enables access to the IUPHAR/BPS Guide to PHARMACOLOGY database for querying drug targets, ligands, and pharmacological data without API keys.

Enables AI agents to control RELION 5.x cryo-EM structure determination software through natural language, providing 23 tools for the complete single-particle analysis pipeline.

Exposes the Adaptyv Foundry protein characterization API as MCP tools, enabling AI assistants to interact with experiments, targets, sequences, and results in natural language.

Enables querying and analyzing medical cohorts from CogStack via the Model Context Protocol, supporting SNOMED-CT search, cohort creation, and demographic analysis.

MCP server for querying the GWAS Catalog (EBI/NHGRI), a curated catalog of genome-wide association studies. It enables AI agents to search and retrieve study data via natural language or direct tool calls.

Enables querying and browsing ontologies from the EBI Ontology Lookup Service, including searching for terms, retrieving term details, and navigating ontology hierarchies via natural language.

MCP server for querying the official ANVISA electronic drug bulletin from a trusted source. It provides a single read-only tool for consulting drug information through natural language in any MCP-compatible client.