A
license-
qualityD
maintenanceBridge any AI coding assistant directly to GenePattern — run bioinformatics modules, manage cloud jobs, and stream results, all through natural language.
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1
BSD 3-Clause
61,266 servers. Last updated
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"LLVM compiler infrastructure and toolchain" matching MCP servers:
snowstorm-mcp-serverofficial
Alicense-qualityCmaintenanceEnables AI assistants to look up, search, validate, navigate hierarchies, and expand value sets for SNOMED CT clinical terminology through the Model Context Protocol.Last updated7Apache 2.0
galaxy-mcpofficial
Alicense-qualityCmaintenanceMCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.Last updated36MIT- Alicense-qualityDmaintenanceEnables molecular generation, optimization, and analysis through NVIDIA MolMIM API. Supports generating drug-like molecules with desired properties, extracting molecular embeddings, and exploring chemical space around seed molecules.Last updatedMIT
- Alicense-qualityDmaintenanceEnables interaction with FHIR resources on Google Cloud Healthcare API through a SmartOnFHIR gateway secured by Firebase Auth, providing access to patient data, medical records, and medical research tools like PubMed.Last updated1MIT
- Alicense-qualityDmaintenanceEnables MCP clients like Claude Desktop to interact with openEHR REST APIs (EHRbase) for creating compositions, managing EHRs, listing templates, and executing AQL queries.Last updated18MIT
- Alicense-qualityCmaintenanceMCP-native scientific skills for reproducible computational biology and AI-driven drug-discovery workflows. It combines deterministic scientific tools with an MCP server to give AI agents real computational capabilities.Last updatedApache 2.0
- Alicense-qualityCmaintenanceSovereign MCP server for fallclinic-us, enabling AI agents to manage clinic workflows via Ed25519-signed, offline-capable tools. MIT-licensed and runs on your own infrastructure.Last updatedMIT
- Alicense-qualityDmaintenanceProvides access to BioThings.io APIs for comprehensive gene and variant annotations, enabling seamless integration of biological data into workflows.Last updated1,0436MIT
- Alicense-qualityCmaintenanceEnables AI assistants to query gene annotations, expression, pathways, variants, and more via the MyGene.info API, supporting batch operations and multiple biological data sources.Last updatedMIT
- Alicense-qualityDmaintenanceAn MCP server that provides SNOMED CT clinical terminology lookup via any FHIR R4 terminology server supporting SNOMED CT and ECL. Offers tools for searching by term, fetching by code, and navigating the concept hierarchy.Last updated20Apache 2.0
- Alicense-qualityBmaintenanceMCP server for the Semble practice-management API, enabling AI agents to search for patients, contacts, and users, as well as retrieve patient relationships via read-only tools.Last updatedMIT
- Alicense-qualityDmaintenanceIntegrates with EMRs like Cerner and Epic via FHIR to retrieve patient data, and provides medical research tools (PubMed, clinical trials, FDA) for clinical analysis.Last updated1MIT
- Alicense-qualityAmaintenanceDecodes, searches, validates, and crosswalks US medical codes (ICD-10-CM, ICD-10-PCS, HCPCS Level II) using an offline bundled index via MCP.Last updated6221Apache 2.0
- Alicense-qualityBmaintenanceEnables LLM agents to design proteins, predict structures, score interfaces, and run molecular dynamics simulations through a unified interface.Last updatedApache 2.0
- Alicense-qualityDmaintenanceEnables querying clinical trial data from the AACT database (ClinicalTrials.gov) using natural language through tools like list_tables, describe_table, and read_query.Last updatedGPL 3.0
- Alicense-qualityCmaintenanceMCP server for accessing the LungMAP API, enabling AI assistants to discover and analyze lung research data such as datasets, samples, and analysis results.Last updatedMIT
- Alicense-qualityDmaintenanceEnables searching, analyzing, and retrieving real-time clinical trial data from ClinicalTrials.gov via 18 specialized MCP tools, including filters for condition, location, phase, and eligibility.Last updated222MIT
OpenCRAVATofficial
Flicense-qualityDmaintenanceAnnotate variants by with a deep and rich set of data. Can annotate: genetic change, rsID, CAid, HGVS (g./c./p.), protein change.Last updated5- Alicense-qualityCmaintenanceEnables coding agents to interact with the Reactome pathway database, including search, lookup, hierarchy traversal, SBML/SBGN export, and gene-set enrichment analysis.Last updatedMIT