Amass MCP server
Provides discovery and retrieval of biomedical publications from PubMed/PMC, including abstracts, authors, journal metadata, citations, MeSH terms, and optional fulltext.
Click on "Deploy Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type
@followed by the MCP server name and your instructions, e.g., "@Amass MCP serverFind clinical trials for Osimertinib and link their associated publications."
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
Amass MCP server
Amass is a remote MCP server for life-science research. It exposes one linked corpus — publications, clinical trials, drugs, genes, regulatory approvals and patents — to Claude, ChatGPT, VS Code, Cursor and any other MCP client.
This repository holds the MCP Registry
listing (server.json). The server itself is a hosted service, so there is
nothing here to install or run.
Connect
Amass speaks streamable HTTP with OAuth 2.1. Most clients need only the URL:
https://mcp.amass.tech/mcpYou will be redirected to sign in with your Amass account; new accounts are
provisioned automatically with trial credits. Clients that cannot complete an
OAuth flow can instead send an Amass API key (amass_…) as a bearer token.
Or install it from the registry by name: tech.amass/amass.
The server supports every MCP protocol revision from 2024-10-07 through
2026-07-28. Clients on 2026-07-28 are served per request, with no initialize
handshake or session; the tools are identical on every revision.
Related MCP server: aria-mcp-server
What you get
Six Cores, cross-linked so you can move between them in a single query — publications ↔ trials, trials ↔ drugs, drugs ↔ genes, drugs ↔ approvals, and patents ↔ drugs/publications.
Core | Contents |
BioMedCore | 43M+ biomedical publications (PubMed/PMC-derived) with abstracts, authors, journal metadata, citations, MeSH terms and optional fulltext, plus conference abstracts from society meetings |
TrialCore | 1.2M+ clinical trials (ClinicalTrials.gov + WHO ICTRP non-US registries) with phase, status, sponsor and collaborators, conditions, interventions and arms, enrollment, registered endpoints and posted results |
DrugCore | 22K+ harmonized drugs/molecules (ChEMBL-anchored) with modality, clinical stage, chemical structure, synonyms and trade names |
GeneCore | 43K+ harmonized genes (Ensembl-anchored) with biotype, RefSeq summary, tractability/safety intelligence and UniProt protein annotations |
RegulatoryCore | Unified FDA + EMA authorizations with approval status, orphan designations, and parsed source documents (labels, SmPCs, reviews, EPARs) |
PatentCore (preview) | Life-science patents (USPTO/EPO/WIPO subset) with full-text search, CPC/IPC classifications, assignees/inventors and patent families |
Each Core has a search_amass_<core>_records tool for discovery and a
get_amass_<core>_record tool for fetching a known identifier. RegulatoryCore
adds get_amass_regulatorycore_document_section for full source-document text,
and send_feedback reports data issues straight to the Amass data team.
Every search tool takes a limit (1–50, default 10). Every search except
PatentCore also takes minLastUpdateDate and minCreateDate, which filter on
when Amass last updated a record or first ingested it. Use them for "what
changed since I last looked" questions. Publication, patent, trial start and
trial completion dates can be bounded on both ends, and BioMedCore search can be
narrowed to given journals (journalIssns) or publication types
(publicationTypes, e.g. Clinical Trial or Conference). Every record
carries a url that links to its source.
Website: https://amass.tech · Platform: https://platform.amass.tech · API docs: https://mcp.amass.tech/api/doc
License
Maintainers
Everything below is the release runbook for this listing. It is not needed to use the server.
server.json is the source of truth. The registry authenticates by DNS: a TXT
record on amass.tech carries the public half of an Ed25519 key, and CI signs
with the private half. That is why the listing is namespaced tech.amass/…
rather than under a GitHub org.
Publishing a new version
Each ## vN entry in the MCP changelog
becomes listing version N.0.0, but only once the server is actually deployed.
Check that the new parameters appear in the live tool schemas before bumping.
On a
release-Nbranch, bumpversioninserver.json. Update the README's "What you get" for anything user-facing in the changelog entry, and updatedescriptionif a headline count moved.Open a PR — CI validates the file, checks the version is not already published, and confirms
https://mcp.amass.tech/mcpis up.Merge, then tag:
git tag vX.Y.Z && git push origin vX.Y.Z # must match "version" in server.jsonA second admin approves the
mcp-registrydeployment on the tag's Actions run. Publishing waits there until they do.Create the GitHub Release and point back to the changelog:
gh release create vX.Y.Z --verify-tag --latest \ --title "vX.Y.Z — aligned with MCP server vX" --notes "…"Delete the local
release-Nbranch. GitHub drops the remote one on merge.
The tag must match version in server.json or the workflow fails.
The listing version tracks the major version of the deployed MCP server.
One-time DNS auth setup
./scripts/setup-dns-auth.shGenerates the keypair and prints the Cloudflare TXT record and the
gh secret set command for MCP_PRIVATE_KEY. Follow its four steps, then
delete the local key.pem.
Publishing by hand
brew install mcp-publisher
mcp-publisher login dns --domain amass.tech \
--private-key "$(openssl pkey -in key.pem -noout -text | grep -A3 'priv:' | tail -n +2 | tr -d ' :\n')"
mcp-publisher publishVerify:
curl --get --data-urlencode "search=tech.amass/amass" \
https://registry.modelcontextprotocol.io/v0.1/serversConstraints worth remembering
descriptionis capped at 100 characters. CI enforces this.Published versions are immutable, and servers currently cannot be deleted or unpublished — corrections ship as a new version.
Do not name a release branch after its version; it collides with the tag and
git push origin vX.Y.Zbecomes ambiguous.
This server cannot be deployed
Maintenance
Related MCP Connectors
Auditable MCP server for PubMed, Europe PMC, ClinicalTrials.gov, and bioRxiv/medRxiv queries
Public read-only MCP access to digital learning concepts, semantic relationships, and citations.
NIH clinical trials and FDA adverse event reports. 4 MCP tools for health research.
Open Targets MCP — disease/target/drug knowledge graph.
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