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maintenanceMCP server for gene family analysis, providing tools for FASTA validation and PlantCARE cis-element prediction, with backend task management for AI agents.
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Noctua MCP Serverofficial
AlicenseAqualityCmaintenanceEnables editing and querying of Gene Ontology Causal Activity Models (GO-CAMs) through the Barista API. Supports model creation, individual and fact management, evidence addition, and causal pathway construction for biological knowledge representation.18BSD 3-Clause- FlicenseAqualityDmaintenanceLeverages large language models to analyze users' WeGene genetic testing reports, providing access to report data via custom URI schemes and enabling profile and report management through OAuth authentication and API utilization.44
- FlicenseBqualityCmaintenanceEnables protein structure and sequence searches using FoldSeek, with support for multiple databases, automatic model downloads, and structured job management.5
- AlicenseBqualityAmaintenanceEnables running GROMACS molecular dynamics simulations through natural language, with tools for topology building, solvation, simulation management, and trajectory processing via the Model Context Protocol.31MIT
- AlicenseCqualityBmaintenanceEnables workflow management and Docker image building for Bio-OS platform. Supports WDL workflow submission, validation, and monitoring, along with Docker image building and status tracking for bioinformatics workflows.225MIT
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AlicenseNot gradedqualityBmaintenanceOfficial public, read-only Helena Bioinformatics MCP for source-cited answers about the company and its published products.Apache 2.0- AlicenseNot gradedqualityDmaintenanceEnables AI assistants to create, monitor, and manage computational tasks through GA4GH Task Execution Service (TES) functionality. Provides seamless access to TES-compliant services for executing bioinformatics and scientific computing workflows.Apache 2.0
- FlicenseNot gradedqualityCmaintenanceEnables Claude Code to interact with a TACC or SLURM HPC cluster for bioinformatics pipelines, allowing job management, log reading, file browsing, remote script execution, and job submission through natural language.
- FlicenseNot gradedqualityDmaintenanceEnables AI-powered protein design, including binders, peptides, and custom proteins, with GPU-accelerated Docker deployment and async job management.2
- FlicenseNot gradedqualityAmaintenanceManages local protein experiments with a Flask backend and SQLite, offering tools for protein library management, Beer-Lambert concentration calculations, BLI dilution planning, and experiment archiving. It provides 7 MCP tools for AI assistants like Claude to interact with the system.2
- FlicenseNot gradedqualityDmaintenanceEnables protein sequence analysis and structure prediction by extracting ESM-2 embeddings and batch processing FASTA files via Docker. It provides tools for large-scale embedding extraction, job monitoring, and model management within an MCP-compatible environment.
- FlicenseNot gradedqualityDmaintenanceEnables protein structure prediction using the Chai-1 model via Docker, with tools for small peptides, FASTA-based predictions, MSA-enhanced predictions, batch processing, and job management.