vmd-mcpBiology & MedicineResearch & DataAlierknAlicense-qualityCmaintenanceDrive VMD headlessly from any MCP client to analyze structures and trajectories, and ray-trace publication-quality images with no display. Last updated 2026-07-08MIT
gromacs-mcpBioinformaticsBiology & MedicineAlierknAlicense-qualityAmaintenanceEnables running GROMACS molecular dynamics simulations through natural language, with tools for topology building, solvation, simulation management, and trajectory processing via the Model Context Protocol. Last updated 2026-07-08MIT