"Querying Hudi Data" matching MCP servers:

• 

  WormBase MCP Serverofficial

  WormBase

  A

  license

  A

  quality

  D

  maintenance

  Enables querying the WormBase database for C. elegans and nematode genomics data, including gene information, protein sequences, phenotypes, interactions, and expression patterns through natural language.

  Last updated 2025-12-12

  12

  19

  MIT

• biothings-mcp

  longevity-genie

  A

  license

  A

  quality

  F

  maintenance

  Provides a Model Context Protocol server for accessing and querying biomedical data from BioThings services, including gene, variant, chemical, and taxon annotations.

  Last updated 2025-11-03

  19

  33

  MIT
• 

  openpgxofficial

  open-pgx

  A

  license

  A

  quality

  D

  maintenance

  Enables AI-driven pharmacogenomic analysis by querying structured genetic variant, drug response, and disease risk data. Supports natural language questions about medications, traits, and health risks based on user genome data, with privacy-first local execution.

  Last updated 2026-04-13

  16

  37

  11

  MIT

• uniprot-mcp

  fastmcp-me

  A

  license

  B

  quality

  D

  maintenance

  Provides seamless access to UniProtKB protein data, enabling querying of protein entries, sequences, Gene Ontology annotations, and ID mappings through a typed, resilient interface.

  Last updated 2025-12-22

  5

  MIT

• bertron-mcp

  ber-data

  A

  license

  B

  quality

  D

  maintenance

  MCP server providing access to the BERtron API for aggregating genomic and environmental data from multiple BER data sources, enabling geospatial search and health checks.

  Last updated 2025-09-17

  8

  3

  BSD 3-Clause

• mcp-gnomad

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying the gnomAD genome aggregation database for variant, gene, and region information.

  Last updated 2026-06-02

  15

  MIT

• mcp-gwas-catalog

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  MCP server for querying the GWAS Catalog (EBI/NHGRI), a curated catalog of genome-wide association studies. It enables AI agents to search and retrieve study data via natural language or direct tool calls.

  Last updated 2026-06-08

  6

  MIT

• mcp-mygene-info

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  MCP server for querying gene annotations, full-text gene search, and species taxonomy via MyGene.info. Enables AI agents to access gene data through natural language questions.

  Last updated 2026-06-02

  15

  MIT

• BV-BRC MCP Server

  soham-shukla

  A

  license

  -

  quality

  D

  maintenance

  Enables querying and retrieving bacterial and viral genomic data, features, antimicrobial resistance, and epitopes from the BV-BRC API using natural language.

  Last updated 2026-02-09

  MIT

• mcp-interpro

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  This server provides access to InterPro protein family, domain, and functional-site classification data from EBI. It allows querying protein annotations through natural language or direct tool calls.

  Last updated 2026-06-08

  8

  MIT
• 

  Glygen MCP Serverofficial

  glygener

  F

  license

  -

  quality

  B

  maintenance

  MCP server that enables querying GlyGen for summaries of proteins, glycans, sites, biomarkers, and diseases.

  Last updated 2026-07-15

• mcp-ensembl

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying Ensembl genomic data including gene lookup, sequence retrieval, homology, variation, and variant effect prediction via MCP tools.

  Last updated 2026-06-02

  15

  MIT

• anndata-mcp-workshop

  dschaub95

  A

  license

  -

  quality

  D

  maintenance

  Enables interaction with AnnData objects via the Model Context Protocol, allowing querying and manipulation of annotated data matrices for single-cell genomics.

  Last updated 2025-11-18

  2

  MIT

• mcp-protein-atlas

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying the Human Protein Atlas data using natural language or direct MCP tools, with keyless access via the Pipeworx gateway.

  Last updated 2026-06-09

  10

  MIT

• mcp-gtex

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying GTEx gene expression, eQTL, and tissue data through an MCP gateway.

  Last updated 2026-06-02

  MIT

• Aurora-MCP

  ndaniel

  A

  license

  -

  quality

  D

  maintenance

  Enables querying relationships between plant species, small molecules, and mitochondrial Complex I inhibitors by bridging natural-product, biodiversity, and PubMed datasets. Allows LLMs to perform structured searches and reasoning over biological data to identify potential plant-derived mitochondrial inhibitors.

  Last updated 2025-10-13

  GPL 3.0

• mcp-rcsb-pdb

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying and retrieving experimental protein structures from the RCSB Protein Data Bank, including text search, full entry records, polymer entities, ligands, and assemblies.

  Last updated 2026-06-26

  27

  MIT

• microbeFunction_mcp

  Miooooooo

  A

  license

  -

  quality

  C

  maintenance

  Supports querying and downloading MGnify genome data and performing KEGG functional annotation and module completeness analysis for microbial genomes.

  Last updated 2026-06-18

  1

  MIT

• expression-atlas

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying the EBI Expression Atlas for gene expression data across species and conditions. Part of the Pipeworx gateway, it provides access to baseline and differential expression studies.

  Last updated 2026-06-09

  13

  MIT

• clingen-link

  berntpopp

  A

  license

  -

  quality

  B

  maintenance

  Enables querying ClinGen curated evidence for gene-disease validity, dosage, actionability, and variant pathogenicity via MCP tools.

  Last updated 2026-07-31

  MIT