"Jio" matching MCP servers:

• 

  Bio-MCP BLASTofficial

  bio-mcp

  A

  license

  -

  quality

  D

  maintenance

  Enables AI assistants to perform NCBI BLAST sequence similarity searches through natural language, supporting nucleotide and protein searches, custom database creation, and multiple output formats.

  Last updated 2025-06-29

  9

  MIT
• 

  Bio-MCP FastQC Serverofficial

  bio-mcp

  A

  license

  -

  quality

  D

  maintenance

  Enables AI assistants to perform quality control analysis on high-throughput sequencing data using FastQC and MultiQC. It supports single-file and batch processing of FASTQ/FASTA files and generates comprehensive, interactive summary reports.

  Last updated 2025-07-10

  MIT
• 

  bio-mcp-evo2official

  bio-mcp

  A

  license

  -

  quality

  D

  maintenance

  An MCP server that enables AI assistants to generate, score, and analyze DNA sequences using the evo2 genomic foundation model. It supports multiple execution modes including local GPU, SLURM clusters, and the Nvidia NIM cloud API for tasks like variant effect prediction and sequence embedding.

  Last updated 2025-07-10

  MIT

• tacc-mcp-bio

  Narasimhan-Lab

  F

  license

  -

  quality

  C

  maintenance

  Enables Claude Code to interact with a TACC or SLURM HPC cluster for bioinformatics pipelines, allowing job management, log reading, file browsing, remote script execution, and job submission through natural language.

  Last updated 2026-06-08

• BioMCP

  acashmoney

  F

  license

  B

  quality

  D

  maintenance

  A Model Context Protocol server that enhances language models with protein structure analysis capabilities, enabling detailed active site analysis and disease-related protein searches through established protein databases.

  Last updated 2025-03-11

  2

  18

• Bio-OS MCP Server

  GBA-BI

  A

  license

  C

  quality

  B

  maintenance

  Enables workflow management and Docker image building for Bio-OS platform. Supports WDL workflow submission, validation, and monitoring, along with Docker image building and status tracking for bioinformatics workflows.

  Last updated 2026-07-17

  22

  5

  MIT

• BWA MCP Server

  bio-mcp

  A

  license

  -

  quality

  D

  maintenance

  Enables AI assistants to perform DNA/RNA sequence alignment using BWA (Burrows-Wheeler Aligner), supporting both short and long read alignment to reference genomes with indexing, BWA-MEM, and BWA-backtrack algorithms.

  Last updated 2025-07-10

  MIT

• mcp-myvariant

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying metadata from MyVariant.info, a comprehensive variant annotation database, providing dataset statistics, source information, and build versions.

  Last updated 2026-06-08

  7

  MIT

• mcp-uniprot

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Provides access to UniProt protein sequence and function knowledge base, enabling search and retrieval of protein entries, proteomes, taxonomy, and feature annotations.

  Last updated 2026-06-26

  3

  MIT

• mcp-alphafold

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Provides access to AlphaFold predicted protein 3D structures from EBI, enabling retrieval of prediction metadata, summaries, annotations, and UniProt data.

  Last updated 2026-06-26

  18

  MIT

• mcp-rcsb-pdb

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying and retrieving experimental protein structures from the RCSB Protein Data Bank, including text search, full entry records, polymer entities, ligands, and assemblies.

  Last updated 2026-06-26

  20

  MIT

• expression-atlas

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying the EBI Expression Atlas for gene expression data across species and conditions. Part of the Pipeworx gateway, it provides access to baseline and differential expression studies.

  Last updated 2026-06-09

  9

  MIT