"Information about extraction techniques or processes" matching MCP servers:

• pubmed-mcp-server

  cyanheads

  A

  license

  A

  quality

  A

  maintenance

  A bridge connecting AI agents to NCBI's PubMed database through the Model Context Protocol, enabling seamless searching, retrieval, and analysis of biomedical literature and data.

  Last updated 2026-06-30

  10

  2,427

  121

  Apache 2.0
• 

  BioContextAI Knowledgebase MCPofficial

  biocontext-ai

  A

  license

  A

  quality

  C

  maintenance

  An MCP server that provides standardized access to biomedical knowledge bases and resources, enabling AI systems to retrieve verified information from sources like bioRxiv, EuropePMC, and various protein/gene databases.

  Last updated 2026-01-12

  52

  28

  Apache 2.0
• 

  WormBase MCP Serverofficial

  WormBase

  A

  license

  A

  quality

  D

  maintenance

  Enables querying the WormBase database for C. elegans and nematode genomics data, including gene information, protein sequences, phenotypes, interactions, and expression patterns through natural language.

  Last updated 2025-12-12

  12

  1

  MIT
• 

  openpgxofficial

  open-pgx

  A

  license

  A

  quality

  D

  maintenance

  Enables AI-driven pharmacogenomic analysis by querying structured genetic variant, drug response, and disease risk data. Supports natural language questions about medications, traits, and health risks based on user genome data, with privacy-first local execution.

  Last updated 2026-04-13

  16

  90

  10

  MIT

• Ensembl MCP Server

  effieklimi

  A

  license

  A

  quality

  D

  maintenance

  A Model Context Protocol server providing LLMs with access to the Ensembl genomics database, enabling AI assistants to query gene information, sequences, variants, and other genomic data across multiple species.

  Last updated 2026-02-11

  10

  8

  JavaScript

  MIT

• gnomAD MCP Server

  koido

  A

  license

  B

  quality

  C

  maintenance

  Provides a programmatic interface to the Genome Aggregation Database (gnomAD) API across versions v2.1.1, v3.1.2, and v4.1.0. It enables users to query gene metadata, variant information, population frequencies, and ClinVar data through a unified schema.

  Last updated 2026-01-23

  12

  5

  Apache 2.0

• genome-mcp

  gqy20

  A

  license

  B

  quality

  C

  maintenance

  Intelligent Genomic Data Server Provides high-quality gene information queries, homologous gene analysis, and evolutionary research functions via the MCP protocol.

  Last updated 2025-12-08

  6

  2

  MIT

• cxg-census-mcp

  MaxMLang

  A

  license

  B

  quality

  C

  maintenance

  Enables LLM agents to query the CZ CELLxGENE Census single-cell atlas with ontology-aware filters, cost caps, and full provenance, allowing natural language questions about cell types, tissues, and gene expression.

  Last updated 2026-07-15

  13

  MIT

• UniProt MCP Server

  TakumiY235

  A

  license

  B

  quality

  D

  maintenance

  Enables AI assistants to access protein information directly from UniProt, allowing retrieval of protein names, functions, sequences, and organism data by accession number.

  Last updated 2026-05-29

  2

  13

  MIT

• PubChem MCP Server

  k-lordbodin7

  A

  license

  B

  quality

  D

  maintenance

  Enables comprehensive access to PubChem's chemical database with over 110 million compounds. Supports chemical searches, structure analysis, bioactivity data, safety information, and molecular property calculations through 30 specialized tools.

  Last updated 2025-09-29

  30

  MIT

• gnomAD MCP Server

  shukwong

  F

  license

  B

  quality

  D

  maintenance

  Enables AI assistants to query genetic variant data, gene constraints, and population genetics information from the gnomAD (Genome Aggregation Database) through its GraphQL API. Supports searching for genes and variants, retrieving constraint scores, analyzing population frequencies, and accessing genomic coverage data.

  Last updated 2025-08-13

  9

  10

• cBioPortal MCP Server

  pickleton89

  A

  license

  C

  quality

  D

  maintenance

  A server that enables AI assistants to interact with cancer genomics data from cBioPortal, allowing users to explore cancer studies, access genomic data, and retrieve mutations and clinical information.

  Last updated 2025-07-21

  17

  5

  MIT

• anndata-mcp

  biocontext-ai

  A

  license

  -

  quality

  C

  maintenance

  Allows to retrieve information about an AnnData object via MCP using the read_lazy function from anndata.

  Last updated 2026-02-27

  7

  MIT

• PocketScout MCP

  Proprius-Labs

  A

  license

  -

  quality

  B

  maintenance

  Enables AI assistants to rapidly gather and synthesize structural, chemical, conservation, and literature data about protein binding pockets for drug-target triage. Useful as a reconnaissance step before computational binder design.

  Last updated 2026-06-15

  1

  MIT

• mcp-myvariant

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Enables querying metadata from MyVariant.info, a comprehensive variant annotation database, providing dataset statistics, source information, and build versions.

  Last updated 2026-06-08

  7

  MIT

• Protein Structure MCP Server

  soffelcopter

  A

  license

  -

  quality

  D

  maintenance

  Searches UniProt by protein name to find accession numbers and retrieves detailed protein structure information from AlphaFold, including direct links to 3D structural predictions.

  Last updated 2025-08-04

  3

  MIT

• UniProt MCP Server

  vitamin3615

  A

  license

  -

  quality

  D

  maintenance

  An MCP server that enables language models to fetch protein information from the UniProt database, including protein details, sequences, functions, and structures.

  Last updated 2025-04-01

  MIT

• BioContextAI Knowledgebase MCP

  fastmcp-me

  A

  license

  -

  quality

  D

  maintenance

  A unified MCP server for biomedical research that connects AI systems to resources like Ensembl, EuropePMC, STRING, and more, enabling retrieval of verified domain-specific information.

  Last updated 2026-01-19

  Apache 2.0

• Biomolecule Modeling MCP

  huangjianhuster

  F

  license

  -

  quality

  D

  maintenance

  Enables AI assistants to clean PDB structures and run initial-stage energy relaxation for biomolecular modeling. It provides a structured workflow for preparing structures before production molecular dynamics or coarse-graining pipelines.

  Last updated 2026-04-21

• tacc-mcp-bio

  Narasimhan-Lab

  F

  license

  -

  quality

  C

  maintenance

  Enables Claude Code to interact with a TACC or SLURM HPC cluster for bioinformatics pipelines, allowing job management, log reading, file browsing, remote script execution, and job submission through natural language.

  Last updated 2026-06-08