"Free AI Tools for Generating Images and Videos" matching MCP servers:

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  FLASK-toolsofficial

  FLASK-LLNL

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  Provides a collection of MCP servers for computational chemistry tasks including molecular generation and retrosynthesis. Also offers property prediction and molecule pricing capabilities.

  Last updated 2026-07-21

• Omics AI MCP Server

  mfiume

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  Enables AI agents to conversationally interact with genomics research networks for data analysis and discovery across multiple Omics AI Explorer platforms. It provides tools for exploring data collections, examining table schemas, and executing SQL queries against datasets like Viral AI and Neuroscience AI.

  Last updated 2025-06-20

  6

  1

  MIT

• scvi-tools MCP Server

  hyennnnnnn

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  Enables deep probabilistic analysis of single-cell omics data using scvi-tools through natural language. Supports SCVI for scRNA-seq analysis, SCANVI for cell type annotation, TOTALVI for multi-modal RNA/protein data, and PEAKVI for scATAC-seq analysis.

  Last updated 2025-10-14

  MIT

• MOF Tools MCP Server

  liuyuxiang92

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  A specialized MCP server for Metal-Organic Framework research that provides tools for database searching, structural optimization, and energy calculations via ASE. It enables scientific workflows by allowing users to interact with MOF data and perform chemical simulations through a standard SSE interface.

  Last updated 2026-04-07

  MIT

• gget-cryo

  IrisApo13

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  Enables searching cryo-EM density maps in EMDB and raw datasets in EMPIAR, with filtering by resolution, keyword, and cross-referencing between the two databases.

  Last updated 2026-06-18

  MIT

• MCP Server for Cirro Data

  NorahZager

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  This server enables multi-agent conversations for interacting with Cirro's biological data platform through its OpenAPI interface, auto-generated using AG2's MCP builder.

  Last updated 2025-06-03

• nucleotide_archive_mcp

  biocontext-ai

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  An MCP server for searching and accessing RNA sequencing datasets from the European Nucleotide Archive (ENA), supporting bulk, single-cell, and spatial transcriptomics with advanced filtering and download capabilities.

  Last updated 2026-02-27

  11

  1

  Apache 2.0
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  BioContextAI Knowledgebase MCPofficial

  biocontext-ai

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  An MCP server that provides standardized access to biomedical knowledge bases and resources, enabling AI systems to retrieve verified information from sources like bioRxiv, EuropePMC, and various protein/gene databases.

  Last updated 2026-01-12

  52

  28

  Apache 2.0

• BioNext-mcp

  Cherine0205

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  Enables bioinformatics analysis through natural language conversations with Claude Desktop, automatically generating and executing Python scripts to produce HTML reports and visualizations.

  Last updated 2025-08-31

  3

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  8

  MIT

• anndata-mcp

  biocontext-ai

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  Allows to retrieve information about an AnnData object via MCP using the read_lazy function from anndata.

  Last updated 2026-02-27

  7

  MIT

• MolMIM MCP Server

  siarhei-fedziukovich

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  Enables molecular generation, optimization, and analysis through NVIDIA MolMIM API. Supports generating drug-like molecules with desired properties, extracting molecular embeddings, and exploring chemical space around seed molecules.

  Last updated 2025-08-26

  MIT

• llamacpp-mcp

  lukasmki

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  An MCP server for running local LLMs using llama-cpp-python, with built-in tools for generating drug-like molecule SMILES.

  Last updated 2025-11-24

  3

  MIT

• genefoundry

  berntpopp

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  Federates 13 gene-related MCP backends (gnomAD, GTEx, etc.) behind a single Streamable HTTP endpoint with collision-free namespacing and search-based tool discovery.

  Last updated 2026-07-30

  1

  MIT

• OakVar MCP Server

  miliyarsh

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  Enables AI assistants to perform genomic variant analysis using OakVar, including running annotation pipelines, managing 200+ annotator modules, querying variant databases, and generating reports in various formats.

  Last updated 2025-12-12

  MIT

• AACT Clinical Trials MCP

  navisbio

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  Provides access to the ClinicalTrials.gov AACT database, enabling analysis of clinical trial data, tracking development trends, and generating therapeutic landscape insights.

  Last updated 2026-03-11

  18

  MIT

• gRNAde MCP Server

  MacromNex

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  Enables RNA structure analysis, sequence evaluation, and inverse design using geometric deep learning models. Supports both quick computational analysis and long-running batch processing for generating RNA sequences that fold into target structures.

  Last updated 2025-12-25

• uniprot-link

  berntpopp

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  An MCP server that grounds protein research in the UniProt SPARQL endpoint, providing tools for querying proteins, sequences, variants, diseases, and more via intent-named tools and raw SPARQL.

  Last updated 2026-07-19

  15

  MIT

• metadome-link

  berntpopp

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  Enables querying of per-residue missense tolerance, Pfam domain annotations, and variant counts for human transcripts by wrapping the MetaDome web service. Provides MCP tools for resolving transcripts, requesting tolerance landscapes, and identifying constrained regions.

  Last updated 2026-07-19

  11

  MIT

• WetLab-MCP

  muslus

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  Enables AI-assisted molecular biology experiment design with tools for qPCR primer design, cloning strategy optimization, TaqMan probe design, and multiplex compatibility analysis.

  Last updated 2026-04-08

  6

  1

  MIT

• plant-genomics-mcp

  musharna

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  ▎ Provides 32 tools for plant-genomics locus lookup across 11 free public backends (Ensembl Plants, Phytozome, UniProtKB, Europe PMC, QuickGO, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, BAR). Takes a TAIR-style locus plus optional organism and returns gene metadata, functional/pathway annotation, interactions, co-expression, and literature — in single-locus, batch, and cross-source synthesis.

  Last updated 2026-07-28

  50

  3

  MIT