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mcp-gnomad

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mcp-gnomad

gnomAD MCP — Broad Institute Genome Aggregation Database (GraphQL).

Part of Pipeworx — an MCP gateway connecting AI agents to 673+ live data sources.

Tools

Tool

Description

variant

Variant by chr-pos-ref-alt (e.g. "1-55051215-G-A") or rsid.

gene

Gene info + variants. Accepts gene symbol (e.g. "BRCA1") or Ensembl gene id.

region

Variants in a genomic region (≤25kb recommended).

transcript

Transcript + variants.

search

Gene / variant search (autocomplete).

Related MCP server: gnomAD MCP Server

Quick Start

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

{
  "mcpServers": {
    "gnomad": {
      "url": "https://gateway.pipeworx.io/gnomad/mcp"
    }
  }
}

Or connect to the full Pipeworx gateway for access to all 673+ data sources:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://gateway.pipeworx.io/mcp"
    }
  }
}

Using with ask_pipeworx

Instead of calling tools directly, you can ask questions in plain English:

ask_pipeworx({ question: "your question about Gnomad data" })

The gateway picks the right tool and fills the arguments automatically.

More

License

MIT

This server cannot be installed

A
license - permissive license
-
quality - not tested
C
maintenance

How are these scores calculated?

Maintenance

–Maintainers
–Response time
–Release cycle
–Releases (12mo)
Commit activity

Resources

Unclaimed servers have limited discoverability.

Looking for Admin?

If you are the server author, to access and configure the admin panel.

Related MCP Servers

  • gnomAD MCP Server

    shukwong
    F
    license
    B
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    D
    maintenance
    Enables AI assistants to query genetic variant data, gene constraints, and population genetics information from the gnomAD (Genome Aggregation Database) through its GraphQL API. Supports searching for genes and variants, retrieving constraint scores, analyzing population frequencies, and accessing genomic coverage data.
    Last updated
    9
    10

  • gnomAD MCP Server

    koido
    A
    license
    B
    quality
    D
    maintenance
    Provides a programmatic interface to the Genome Aggregation Database (gnomAD) API across versions v2.1.1, v3.1.2, and v4.1.0. It enables users to query gene metadata, variant information, population frequencies, and ClinVar data through a unified schema.
    Last updated
    12
    5
    Apache 2.0

View all related MCP servers

Related MCP Connectors

  • ensembl-mcp-server

    Look up genes, fetch sequences, predict variant consequences, find orthologs and xrefs via Ensembl.

  • STRING Database MCP Server

    Query STRING interactions, enrichment, annotations, homology, and PPI networks.

  • wikidata-mcp-server

    Search and fetch Wikidata entities, execute SPARQL queries, and resolve external identifiers.

View all MCP Connectors

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