get_uniprot_summary
Retrieve AlphaFold structure model summaries for a UniProt accession, entry name, or CRC64 checksum, including model URLs, confidence scores, and coverage.
Instructions
This tool fetches AlphaFold model predictions for a given UniProt residue range. The tool takes in a UniProt accession number (AC), entry name (ID), or CRC64 checksum and returns detailed information about the structure models available for the specified sequence range.
Arguments
qualifier(str): UniProtKB accession number (AC), entry name (ID), or CRC64 checksum of the UniProt sequence (e.g.,'Q5VSL9').
Example Input:
qualifier:
Q5VSL9
Response Structure
The response includes detailed information about the UniProt entry and its associated AlphaFold models.
Example Response:
{
"uniprot_entry": {
"ac": "Q5VSL9",
"id": "STRP1_HUMAN",
"uniprot_checksum": "5F9BA1D4C7DE6925",
"sequence_length": 837,
"segment_start": 1,
"segment_end": 837
},
"structures": [
{
"summary": {
"model_identifier": "AF-Q5VSL9-F1",
"model_category": "AB-INITIO",
"model_url": "https://alphafold.ebi.ac.uk/files/AF-Q5VSL9-F1-model_v4.cif",
"model_format": "MMCIF",
"model_type": null,
"model_page_url": "https://alphafold.ebi.ac.uk/entry/Q5VSL9",
"provider": "AlphaFold DB",
"number_of_conformers": null,
"ensemble_sample_url": null,
"ensemble_sample_format": null,
"created": "2022-06-01",
"sequence_identity": 1,
"uniprot_start": 1,
"uniprot_end": 837,
"coverage": 1,
"experimental_method": null,
"resolution": null,
"confidence_type": "pLDDT",
"confidence_version": null,
"confidence_avg_local_score": 80.82,
"oligomeric_state": null,
"preferred_assembly_id": null,
"entities": [
{
"entity_type": "POLYMER",
"entity_poly_type": "POLYPEPTIDE(L)",
"identifier": "Q5VSL9",
"identifier_category": "UNIPROT",
"description": "Striatin-interacting protein 1",
"chain_ids": [
"A"
]
}
]
}
}
]
}Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| qualifier | Yes | ||
| output_json | No |