get_alphafold_prediction
Retrieve AlphaFold protein structure models by providing a UniProt accession or CRC64 sequence checksum.
Instructions
This tool retrieves all available AlphaFold models for a specified UniProt accession. It allows querying by the UniProt accession or by the CRC64 checksum of the UniProt sequence.
Arguments
qualifier(str): UniProt accession (e.g.,'Q5VSL9').sequence_checksum(str, optional): CRC64 checksum of the UniProt sequence.
Example Input:
qualifier:
Q5VSL9sequence_checksum:
5F9BA1D4C7DE6925
Response Structure
The response will be a list of objects, each containing detailed information about the available AlphaFold models.
Example Output:
[
{
"entryId": "AF-Q5VSL9-F1",
"gene": "STRIP1",
"sequenceChecksum": "5F9BA1D4C7DE6925",
"sequenceVersionDate": "2004-12-07",
"uniprotAccession": "Q5VSL9",
"uniprotId": "STRP1_HUMAN",
"uniprotDescription": "Striatin-interacting protein 1",
"taxId": 9606,
"organismScientificName": "Homo sapiens",
"uniprotStart": 1,
"uniprotEnd": 837,
"uniprotSequence": "MEPAVGGPGPLIVNNKQPQPPPPPPPAAAQPPPGAPRAAAGLLPGGKAREFN...",
"modelCreatedDate": "2022-06-01",
"latestVersion": 4,
"allVersions": [1, 2, 3, 4],
"bcifUrl": "https://alphafold.ebi.ac.uk/files/AF-Q5VSL9-F1-model_v4.bcif",
"cifUrl": "https://alphafold.ebi.ac.uk/files/AF-Q5VSL9-F1-model_v4.cif",
"pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-Q5VSL9-F1-model_v4.pdb",
"paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-Q5VSL9-F1-predicted_aligned_error_v4.png",
"paeDocUrl": "https://alphafold.ebi.ac.uk/files/AF-Q5VSL9-F1-predicted_aligned_error_v4.json",
"amAnnotationsUrl": "https://alphafold.ebi.ac.uk/files/AF-Q5VSL9-F1-aa-substitutions.csv",
"amAnnotationsHg19Url": "https://alphafold.ebi.ac.uk/files/AF-Q5VSL9-F1-hg19.csv",
"amAnnotationsHg38Url": "https://alphafold.ebi.ac.uk/files/AF-Q5VSL9-F1-hg38.csv",
"isReviewed": true,
"isReferenceProteome": true
}
]Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| qualifier | Yes | ||
| output_json | No | ||
| sequence_checksum | No |