A
license-
qualityC
maintenanceEnables querying ChEMBL drug discovery database for molecules, targets, activities, and drug indications. Part of Pipeworx MCP gateway.
Last updated
5
MIT
mcp-pombase
by pipeworx-io
Click on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type
@followed by the MCP server name and your instructions, e.g., "@mcp-pombasefind genes related to cell cycle in fission yeast"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
mcp-pombase
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
Part of Pipeworx — an MCP gateway connecting AI agents to 823+ live data sources.
Tools
Tool | Description |
Related MCP server: mcp-opentargets
Quick Start
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"pombase": {
"url": "https://gateway.pipeworx.io/pombase/mcp"
}
}
}Or connect to the full Pipeworx gateway for access to all 823+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}Using with ask_pipeworx
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Pombase data" })The gateway picks the right tool and fills the arguments automatically.
More
License
MIT
This server cannot be installed
Maintenance
–Maintainers
–Response time
–Release cycle
–Releases (12mo)
Commit activity
Resources
Unclaimed servers have limited discoverability.
Looking for Admin?
If you are the server author, to access and configure the admin panel.
Related MCP Servers
- Alicense-qualityCmaintenanceEnables querying disease/target/drug knowledge graph from Open Targets, supporting searches, profiles, and associations via natural language through the Pipeworx gateway.Last updated165MIT
- Alicense-qualityCmaintenanceEnables AI agents to query the fission yeast PomBase database for gene summaries, GO annotations, phenotypes, orthologs, domains, and interactions via structured API calls.Last updatedMIT
- Alicense-qualityCmaintenanceEnables querying and searching GOV.UK content through the Pipeworx MCP gateway, integrating with 673+ data sources for AI agent access.Last updated18MIT
Related MCP Connectors
AI-powered bioprotocol optimization — generate, search, and manage lab protocols via MCP
Create, browse, remix, collaborate on, and run durable AI workflow nodes from MCP hosts.
Shared, peer-validated knowledge archive for AI agents — search, contribute, and validate via MCP
Latest Blog Posts
- Who's Calling? MCP Hosts Are an Identity Blind Spot (And the Spec Knows It)By Om-Shree-0709 on .mcpAgent IdentityOAuth 2.1
- Your AI Chatbot Just Exposed Your CEO's Salary to an InternBy Om-Shree-0709 on .Agent IdentityMCP SecurityOAuth Delegation
- Why MCP Servers Need Execution Sandboxing (And Why Your Current Stack Isn't Enough)By Om-Shree-0709 on .Agentic AiPrompt InjectionWebAssembly
MCP directory API
We provide all the information about MCP servers via our MCP API.
curl -X GET 'https://glama.ai/api/mcp/v1/servers/pipeworx-io/mcp-pombase'
If you have feedback or need assistance with the MCP directory API, please join our Discord server