Click on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type @ followed by the MCP server name and your instructions, e.g., "@mcp-metabolights find metabolomics studies on type 2 diabetes"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
MetaboLights MCP — EBI's metabolomics study repository.
Part of Pipeworx — an MCP gateway connecting AI agents to 823+ live data sources.
Tool | Description |
Related MCP server: Unofficial Clinical Trials MCP Server
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"metabolights": {
"url": "https://gateway.pipeworx.io/metabolights/mcp"
}
}
}Or connect to the full Pipeworx gateway for access to all 823+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Metabolights data" })The gateway picks the right tool and fills the arguments automatically.
MIT
This server cannot be installed
Unclaimed servers have limited discoverability.
If you are the server author, to access and configure the admin panel.
ClinicalTrials MCP — wraps ClinicalTrials.gov API v2 (free, no auth)
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
MCP gateway federating 21 biomedical MCP servers behind one endpoint: gnomAD, ClinVar, HPO, VEP.
We provide all the information about MCP servers via our MCP API.
curl -X GET 'https://glama.ai/api/mcp/v1/servers/pipeworx-io/mcp-metabolights'
If you have feedback or need assistance with the MCP directory API, please join our Discord server