Skip to main content
Glama
nickzren

MyGene MCP Server

by nickzren

query_genes_by_interval

Find genes in a specific chromosome interval by supplying chromosome, start, and end positions. Retrieve gene annotations for any genomic region across species.

Instructions

Query genes by genomic interval (chromosome position).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
chrYes
endYes
sizeNo
startYes
fieldsNosymbol,name,taxid,entrezgene
speciesNohuman

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must disclose behavioral traits. It only states the basic query action and does not mention pagination (size), default fields, species handling, or any limits or side effects, leaving the agent without important operational context.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, front-loaded sentence with no filler. Every word contributes to conveying the core purpose, making it highly concise and easy to parse.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

With 6 parameters and no annotations, the description is too sparse to fully guide invocation. It omits defaults, pagination, and field selection details, though an output schema is present, so return values are partially covered.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It clarifies that start/end are chromosome positions, but it does not explain the semantics of optional parameters like size, fields, or species, even though they have defaults and meaningful behavior.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('Query') and resource ('genes') with a clear scope ('by genomic interval (chromosome position)'). It clearly distinguishes this tool from sibling tools like query_genes_by_disease or query_genes_by_expression.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The usage context is implied: use when querying genes by a chromosome interval. However, there is no explicit guidance about when not to use it or which alternative should be used for other query types, despite many sibling query tools existing.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/nickzren/mygene-mcp'

If you have feedback or need assistance with the MCP directory API, please join our Discord server