Skip to main content
Glama
nickzren

MyGene MCP Server

by nickzren

query_genes_batch

Batch retrieve gene annotations for multiple gene IDs simultaneously, including symbols, names, and taxonomy information.

Instructions

Query multiple genes in a single request.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
fieldsNosymbol,name,taxid,entrezgene
scopesNoentrezgene,ensemblgene,symbol
speciesNo
dotfieldNo
gene_idsYes
returnallNo

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden. It only states that it queries multiple genes, which implies a read operation, but does not disclose return format, pagination, rate limits, or any operational nuances. Minimal behavioral context beyond the implied read-only nature.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single sentence with no fluff, front-loading the key point. While concise, it is arguably too terse to be fully useful, but it earns points for zero wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has six parameters, no annotations, and an output schema, the description is severely incomplete. It does not mention the output, parameter usage, or any guidance for a complex batch query tool. Even though an output schema exists, the description should hint at what data is returned or how the batching works.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters1/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, and the description does not mention any of the six parameters. The schema itself provides only type/defaults, not semantic meaning. The description fails to compensate for the complete lack of parameter documentation.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool queries multiple genes in a single request, distinguishing it from single-gene or disease/pathway-specific query tools. The verb 'Query' and resource 'genes' are specific, and the scope is explicitly defined as batch/multiple.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus alternatives like query_genes or get_genes_batch. It does not mention prerequisites, exclusions, or comparisons with sibling tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/nickzren/mygene-mcp'

If you have feedback or need assistance with the MCP directory API, please join our Discord server