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m-siles

Branch Thinking MCP Server

by m-siles

Branch Thinking

An MCP server that implements branch-based thought navigation, with support for:

  • Multiple branches of thought

  • Branch navigation (list, focus, history)

  • Cross-references between related thoughts

  • Insight generation from key points

  • Branch priority tracking

This is based on the sequential-thinking tool available here: https://github.com/modelcontextprotocol/servers/tree/main/src/sequentialthinking

Features

  • Branch Management: Create and navigate between different lines of thought

  • Cross References: Link related thoughts across branches with typed relationships

  • Insights: Automatically generate insights from key points in thoughts

  • Priority Tracking: Track branch priorities based on confidence and connections

Related MCP server: UltraThink

Commands

  • list: Show all branches with their current status

  • focus [branchId]: Switch focus to a specific branch

  • history [branchId?]: Show the history of thoughts in a branch

Installation

Place this project in your custom MCP tool directory.

npm install
npm run build 

Add to your claude_desktop_config.json:

"branch-thinking": {
  "command": "node",
  "args": [
    "/your-custom-mcp-dir-here/branch-thinking/dist/index.js"
  ]
}

Tips

Claude often will not use tools unless explicitly prompted to do so.

If you want to use this tool without being prompted, add to either your Claude Profile Settings (or a system prompt) something like so:

If I ask you to "think step by step," "think before you respond," or "use chain of thought," that means use the branch-thinking tool. Don't hesitate to use the branch-thinking tool on your own if you think your response would benefit from multiple steps.

Credits

I can't pretend that I wrote most of this code. Most of it was generated by Claude. The concept was my own, and so were testing, fixes, and implementation.

Available Tools

1 tool
branch-thinkingC

A tool for managing multiple branches of thought with insights and cross-references.

Each thought can:

  • Belong to a specific branch

  • Generate insights

  • Create cross-references to other branches

  • Include confidence scores and key points

The system tracks:

  • Branch priorities and states

  • Relationships between thoughts

  • Accumulated insights

  • Cross-branch connections

Commands:

  • list: Show all branches and their status

  • focus [branchId]: Switch focus to a specific branch

  • history [branchId?]: Show the history of thoughts in a branch (uses active branch if none specified)

ParametersJSON Schema
NameRequiredDescriptionDefault
branchIdNoOptional: ID of the branch (generated if not provided)
commandNoOptional: Navigation command
confidenceNoOptional: Confidence score (0-1)
contentNoThe thought content
crossRefsNoOptional: Cross-references to other branches
keyPointsNoOptional: Key points identified in the thought
parentBranchIdNoOptional: ID of the parent branch
relatedInsightsNoOptional: IDs of related insights
typeNoType of thought (e.g., 'analysis', 'hypothesis', 'observation')

TDQS

C2.8/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It describes system tracking (priorities, states, relationships) and thought capabilities (insights, cross-references), but it fails to disclose critical behavioral traits such as whether operations are read-only or destructive, authentication needs, rate limits, or how data is persisted. This leaves significant gaps for an agent to understand the tool's behavior.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is appropriately sized and front-loaded with a purpose statement, followed by bullet points and commands. Each sentence earns its place by detailing capabilities and usage, though it could be slightly more streamlined by integrating the commands into the flow rather than as a separate section.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the complexity (9 parameters, nested objects, no output schema) and lack of annotations, the description is incomplete. It covers basic functionality but misses critical context like return values, error handling, or operational constraints, making it inadequate for an agent to fully understand how to invoke and interpret results from this tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so the schema already documents all 9 parameters thoroughly. The description adds no specific parameter semantics beyond what the schema provides, such as explaining how 'confidence' scores affect operations or the meaning of 'crossRefs' in practice. Baseline 3 is appropriate as the schema does the heavy lifting.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose3/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states the tool is for 'managing multiple branches of thought with insights and cross-references,' which gives a general purpose but lacks a specific verb and resource. It doesn't distinguish from siblings (none provided), but the purpose remains somewhat vague without concrete examples of what 'managing' entails beyond the listed commands.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage through the 'Commands' section (list, focus, history), suggesting when to use these specific actions, but it lacks explicit guidance on when to use this tool overall versus alternatives (none provided) or any exclusions. The context is implied rather than clearly stated.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

TDQS

B3/5.0
Disambiguation5/5

With only one tool, there is no possibility of ambiguity or overlap between tools. The single tool 'branch-thinking' has a clear and distinct purpose for managing thought branches, making disambiguation perfect.

Naming Consistency5/5

Since there is only one tool, naming consistency is inherently perfect. The tool name 'branch-thinking' follows a clear noun-based pattern, and there are no other tools to cause inconsistency.

Tool Count2/5

A single tool is too few for the apparent scope of managing multiple branches of thought with features like listing, focusing, and showing history. This server likely needs additional tools (e.g., for creating branches, adding thoughts, or deleting branches) to be well-scoped, making the count inappropriate.

Completeness2/5

The tool surface is severely incomplete for the domain of thought management. While the tool handles listing, focusing, and history, there are significant gaps such as creating or deleting branches, adding or modifying thoughts, and managing insights or cross-references directly, which will cause agent failures in comprehensive workflows.

Maintenance

ActivityInactive
ResponsivenessNo issues

Resources

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