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linchinghsuan

Maftools-MCP

by linchinghsuan
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Maftools-MCP

Maftools-MCP exposes R maftools analyses through the Model Context Protocol (MCP). An MCP-compatible client can translate a natural-language request into calls for mutation summaries, oncoplots, cohort comparisons, mutation signatures, clinical enrichment, survival analyses, and copy-number visualization.

The server includes the 59 tools counted in the manuscript, plus the export_r_script validation utility: 60 registered tools in total. See the complete tool reference for inputs, defaults, outputs and underlying R functions. R code is executed through rpy2. ANNOVAR annotation is an optional external workflow; the server's conversion tool consumes annotated multianno files, not unannotated VCFs.

Installation

Download the Maftools-MCP Docker image:

docker pull lin97/maftools-mcp:v.1.1.0

For setup instructions, MCP client configuration, and usage examples, see the Maftools-MCP tutorial.

Related MCP server: Liana-MCP

License

Maftools-MCP code is available under the MIT License. R, maftools, ANNOVAR and other dependencies retain their own licenses. This repository does not grant redistribution rights for third-party datasets or ANNOVAR assets.

Tool Schema Changelog

Recent tool additions, removals, and schema changes observed during successful MCP inspections. Dates show when Glama detected each change.

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