A
license-
qualityF
maintenanceExecutes SPARQL queries against biological and biomedical RDF databases from the RDF Portal, with additional REST API integrations for bioinformatics resources.
Last updated
1
MIT
mcp-bioregistry
by pipeworx-io
Click on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type
@followed by the MCP server name and your instructions, e.g., "@mcp-bioregistryresolve CHEBI:24866"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
mcp-bioregistry
Bioregistry MCP.
Part of Pipeworx — an MCP gateway connecting AI agents to 673+ live data sources.
Tools
Tool | Description |
| Prefix metadata. |
| Substring search over prefixes. |
| Resolve a CURIE (prefix:id) to a provider URL. |
| Paginate over all prefixes. |
Related MCP server: Entrez MCP Server
Quick Start
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"bioregistry": {
"url": "https://gateway.pipeworx.io/bioregistry/mcp"
}
}
}Or connect to the full Pipeworx gateway for access to all 673+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}Using with ask_pipeworx
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Bioregistry data" })The gateway picks the right tool and fills the arguments automatically.
More
License
MIT
This server cannot be installed
Maintenance
–Maintainers
–Response time
–Release cycle
–Releases (12mo)
Commit activity
Resources
Unclaimed servers have limited discoverability.
Looking for Admin?
If you are the server author, to access and configure the admin panel.
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