Allows searching PubMed articles, retrieving metadata, and downloading PMC PDFs.
Click on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type @ followed by the MCP server name and your instructions, e.g., "@pubmed-mcp-server search for recent COVID-19 clinical trials"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
PubMed MCP Server 是一个基于 fastapi-mcp 的服务，提供了对 PubMed 数据库的访问接口。该服务允许用户搜索 PubMed 文章、获取文章元数据以及下载 PMC 文章的 PDF 文件
基本功能:
搜索文章：根据关键词搜索 PubMed 数据库中的文章
获取元数据：获取特定 PubMed ID 的文章详细信息，包括标题、摘要、作者、关键词等
下载 PDF：下载 PMC 文章的 PDF 文件到本地
Related MCP server: PubMed MCP Server
克隆仓库
git clone https://github.com/yourusername/pubmed-mcp-server.git
cd pubmed-mcp-server
# 安装 uv 工具，用于管理虚拟环境和依赖项同步
pip install uv创建并激活虚拟环境
uv sync
source .venv/bin/activate # Linux/Mac
# 或
.venv\Scripts\activate # Windows创建 .env 文件来自定义配置：
DOWNLOAD_PATH=/path/to/store/pdfs默认情况下，PDF 文件将保存在 /tmp/pubmed-pdfs 目录下。
uv run main.py服务器将在 http://localhost:8977 上运行。
然后你可以在 mcp client 中配置这个endpoint，并使用SSE模式
.
├── app/ # API 应用定义
│ └── pubmed.py # PubMed API 端点
├── core/ # 核心功能
│ └── config.py # 配置管理
├── service/ # 服务层
│ ├── __init__.py # 基础 URL 和工具函数
│ ├── file.py # 文件下载功能
│ └── search.py # PubMed 搜索和解析功能
├── tests/ # 测试目录
├── .env # 环境变量配置
├── main.py # 应用入口
└── pyproject.toml # 项目依赖本项目采用 MIT 许可证。详情请参阅 LICENSE 文件。
This server cannot be installed
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If you are the server author, to access and configure the admin panel.
Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms.
PubMed MCP — wraps the NCBI E-utilities API (biomedical literature, free, no auth)
NCBI E-utilities — federated Entrez search/fetch (PubMed/Gene/Nucleotide/…)
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