search_proteomes
Search for proteomes by organism name or NCBI taxonomy ID. Optionally filter to reference proteomes only to get the complete protein set of a genome.
Instructions
Search UniProt proteomes (the protein set of an organism's genome).
Returns the proteome id (UPID), organism, proteome type (Reference /
Non-reference / etc.), and protein/gene counts. Filter by organism_id and
set reference_only=True for reference proteomes.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| query | No | Free-text proteome query, e.g. 'Escherichia coli' or 'Mycobacterium tuberculosis'. May be omitted if organism_id is set. | |
| organism_id | No | NCBI taxonomy id filter, e.g. 9606 for human. | |
| reference_only | No | Only reference proteomes (one high-quality proteome per species group). | |
| size | No | Max proteomes to return (1-500). | |
| format | No | 'summary' = compact list (default); 'tsv' = table. | summary |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |