Skip to main content
Glama
fzlzjerry

uniprot-mcp

by fzlzjerry
OverviewSchemaSourceRelated ServersDiscussionsAdmin
Python
Remote

Related Servers

Alternatives to uniprot-mcp

No user-submitted related servers found.

    Related Servers

    • uniprot-link

      berntpopp
      A
      license
      A
      quality
      A
      maintenance
      An MCP server that grounds protein research in the UniProt SPARQL endpoint, providing tools for querying proteins, sequences, variants, diseases, and more via intent-named tools and raw SPARQL.
      15
      MIT

    • UniProt MCP Server

      vitamin3615
      A
      license
      Not graded
      quality
      D
      maintenance
      An MCP server that enables language models to fetch protein information from the UniProt database, including protein details, sequences, functions, and structures.
      MIT

    • string-mcp

      meringlab
      A
      license
      Not graded
      quality
      C
      maintenance
      MCP server that exposes STRING database functionality, allowing AI agents to resolve protein identifiers, retrieve interaction networks, perform homology lookups, and run functional enrichment analysis.
      7
      MIT

    • TogoMCP

      dbcls
      A
      license
      A
      quality
      A
      maintenance
      An MCP server that gives AI assistants access to biological and biomedical RDF databases via SPARQL at the RDF Portal, as well as selected REST APIs (NCBI E-utilities, UniProt, ChEMBL, PDB, Reactome, Rhea, MeSH, and more).
      29
      16
      MIT

    • BioMCP

      yeyuan98
      A
      license
      A
      quality
      A
      maintenance
      A high-performance MCP server that gives LLMs access to 25 biomedical tools federated across 50+ upstream APIs for genes, variants, drugs, diseases, literature, clinical trials, and structural biology.
      41
      277 npm
      12
      Apache 2.0
    Deploy Server
    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    TDQS

    A4.3/5.0

    Scored across 7 tools

    Disambiguation4/5

    Tools are mostly distinct, but get_entry and get_fasta have overlapping functionality for single-accession FASTA retrieval. However, the descriptions clearly differentiate them (single entry with multiple formats vs. raw FASTA for one or more accessions), so ambiguity is low.

    Naming Consistency5/5

    All tool names follow a consistent verb_noun pattern with snake_case: get_* for retrieval and search_* for queries, plus map_ids. No deviations or mixed conventions.

    Tool Count5/5

    Seven tools is well-scoped for a UniProt MCP server, covering core operations (entry retrieval, search, mapping, taxonomy, proteomes, clusters) without being too many or too few for the domain.

    Completeness5/5

    The tool set covers essential UniProtKB operations: retrieval (single entry, FASTA), searching (entries, proteomes, UniRef), ID mapping, and taxonomy resolution. No obvious gaps for typical read-only use cases.

    Maintenance

    ActivityInactive
    ResponsivenessNo issues

    Resources