Skip to main content
Glama

seq_stats

Validate raw or FASTA sequences: report DNA/RNA/protein type, length, GC content or molecular weight, and composition before heavier tools.

Instructions

Validate sequences: type, length, GC%, molecular weight.

Reports dna/rna/protein type, length, GC content (nucleotides) or molecular weight (proteins) and composition. A cheap first step before heavier tools.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
sequenceYesA raw sequence or FASTA text (one or more records).

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observedv0.1.0

TDQS

A3.6/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries the full burden. It discloses the output content and cost profile ('cheap first step'), which is useful, but says nothing about read-only semantics, behavior on invalid input, or whether multiple FASTA records are handled. Adequate but incomplete for a no-annotation tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two short sentences, front-loaded with the metric list. Slight redundancy between the first line and the restatement of what is reported keeps it from a 5.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

An output schema exists, so return values need not be spelled out, and the description still summarizes them. For a single-parameter read-only analysis tool, the coverage is essentially complete aside from invalid-input behavior.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Only one parameter with 100% schema description coverage, which already explains it accepts a raw sequence or multi-record FASTA text. The description adds no format or constraint detail beyond the schema, so the baseline 3 applies.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

States a specific verb (validate) and resource (sequences) plus the metrics computed (type, length, GC%, MW), so an agent can tell it apart from translate_sequence or find_orfs. It does not, however, explicitly contrast itself with those siblings.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The closing line 'a cheap first step before heavier tools' gives clear context on when to reach for this tool rather than the heavier siblings. No explicit exclusions or named alternatives are provided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.