Skip to main content
Glama

list_databases

List installed sequence databases for homology searches and show which additional databases can be added.

Instructions

Sequence databases installed for search_homologs, and ones that can be added.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observedv0.1.0

TDQS

B3.3/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must carry the full behavioral burden. It states what the list contains (installed vs addable) but does not disclose that this is a read-only operation, nor any authentication, side-effect, or rate-limit behavior.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single concise phrase with no redundant content, and the key distinction (installed for search_homologs) is front-loaded. It is a fragment rather than a complete sentence, but it wastes no words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a zero-parameter list tool with an output schema, the description covers what is listed. However, it omits when to invoke it and does not state its read-only nature; with no annotations, more behavioral context would be useful, though the output schema handles return structure.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The tool has zero parameters and the schema description coverage is 100%, so the baseline is 4. The description adds no parameter information because there are none to describe.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description names the resource (sequence databases) and distinguishes two subsets: installed for search_homologs and addable ones. While it lacks an explicit verb like 'lists', the tool name supplies that, and the mention of the sibling search_homologs helps an agent understand the scope.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit when-to-use or when-not-to-use guidance is provided. The reference to search_homologs implies these databases are meant for that tool, giving an implied usage context, but the description does not state that you should call this before search_homologs or how it differs from other siblings.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.