silva_testprobe
Submit a probe or primer sequence to find all matches in SILVA databases and evaluate coverage. Returns a web URL to view asynchronous TestProbe results.
Instructions
Submit a TestProbe job to find all occurrences of a probe or primer sequence in the SILVA database. TestProbe 3.0 detects and evaluates probe/primer coverage across the SILVA datasets. The job runs asynchronously on the SILVA server; use the returned web URL to view results.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| probe | Yes | Probe/primer sequence (12-36 nt, IUPAC codes: ACGTURYMKWSBDHVN). | |
| jobName | No | Optional job name. | |
| database | No | SILVA database: "ssu-144" or "lsu-138.2". | ssu-144 |
| nmatches | No | Number of required 3' end matches (0-4). | |
| mismatches | No | Number of allowed mismatches (0-5). | |
| databaseType | No | Database type: "ref" (Ref) or "nr" (RefNR). | nr |
| reverseProbe | No | Also search reverse complement. | |
| complementProbe | No | Also search complement. | |
| weightedMismatches | No | Use weighted mismatches. |