silva_search
Search the SILVA rRNA database by organism, accession, strain, taxonomy, length, or quality using AND-combined filters. Returns matching sequences and metadata for 16S/18S or 23S/28S analysis.
Instructions
Search the SILVA rRNA database for sequences by organism name, accession number, strain, taxonomy, sequence length, and other fields. Returns a list of matching sequences with accession numbers, organism names, sequence lengths, quality scores, and taxonomy paths. All criteria are combined with AND logic.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| sort | No | Sort field. | |
| limit | No | Maximum results (1-100). | |
| offset | No | Starting offset (0-based). | |
| onlyRef | No | Filter: only Ref sequences. | |
| criteria | Yes | Array of search criteria (all must match, AND logic). | |
| database | No | SILVA database: "ssu-144" (SSU/16S/18S) or "lsu-138.2" (LSU/23S/28S). | ssu-144 |
| onlyRefNR | No | Filter: only RefNR sequences. | |
| sortOrder | No | Sort order. | asc |