silva_testprime
Submit a primer pair to TestPrime to evaluate its coverage and specificity against the SILVA database. Returns a web URL for asynchronous job results.
Instructions
Submit a TestPrime job to evaluate the coverage and specificity of a primer pair against the SILVA database. TestPrime 1.0 matches forward and reverse primers and calculates coverage per taxonomic group. The job runs asynchronously; use the returned web URL to view results.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| jobName | No | Optional job name. | |
| database | No | SILVA database: "ssu-144" or "lsu-138.2". | ssu-144 |
| mismatches | No | Maximum allowed mismatches per primer (0-5). | |
| databaseType | No | Database type: "ref" (Ref) or "nr" (RefNR). | nr |
| forwardPrimer | Yes | Forward primer sequence (5'→3', IUPAC codes). | |
| reversePrimer | Yes | Reverse primer sequence (5'→3', IUPAC codes). | |
| mismatchRegion | No | Length of 0-mismatch zone at 3' end (0-5). 0 = disabled. | |
| weightedMismatches | No | Use weighted mismatches. | |
| complementReverseProbe | No | Complement the reverse primer before searching. |