Skip to main content
Glama
N283T

chimerax-mcp-plus

by N283T

chimerax_view

Adjust the ChimeraX view to fit all models or zoom to a specific target. Optionally specify an atom selection to focus on that structure.

Instructions

Adjust the view to fit models or a specific target in the window.

Args: target: Optional atom specification to focus on (e.g., "#1", ":MK1"). If not provided, fits all models in the view.

Returns: Result of the view command.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
targetNo

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description is the only source of behavioral information. It states the action and the return value but does not disclose potential side effects, reversibility, or prerequisites. For a view manipulation tool, this is a minor gap.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured: a one-sentence summary followed by clear Args and Returns sections. Every sentence adds value and there is no verbosity.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple tool with one optional parameter and an output schema, the description covers the core behavior and parameter semantics sufficiently. It doesn't mention edge cases or prerequisites, but these are not critical for this tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema provides no description for the 'target' parameter (0% coverage). The description fully compensates by explaining it is optional, giving example atom specifications ('#1', ':MK1'), and describing the default behavior when omitted.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('Adjust') and resource ('view'), and clarifies that it fits either all models or a specific target. This distinguishes it from sibling tools like chimerax_turn (rotate) and chimerax_reset (reset).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides clear context on when to use the tool (to fit models or a target) and explains the default behavior. However, it does not explicitly mention alternatives or exclusions relative to sibling tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/N283T/chimerax-mcp-plus'

If you have feedback or need assistance with the MCP directory API, please join our Discord server