chimerax-mcp-plus
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TDQS
Scored across 27 tools
Each tool has a clearly distinct purpose, from lifecycle management (start/stop/status/detect) to molecular operations (open/close/view/turn) and documentation lookup (api_search, api_read, python_inspect, python_dir). Even similar tools like rich_log vs rich_report are differentiated by composition vs direct writing, and screenshot vs tool_screenshot by target surface.
All tools share the chimerax_ prefix, but the remainder follows no single convention: some are bare verbs (open, close, run, start), some are nouns (models, status, view), and others are object_verb (api_search, session_save, list_screenshots). This mixed pattern is readable but not predictable.
With 27 tools, the count exceeds the 25+ threshold that the rubric marks as too many. The server covers a broad domain, but many tools (api_search, api_read, python_inspect, python_dir, script_recipe_search, script_recipe_read, guide) could potentially be consolidated or exposed via fewer, higher-level tools.
The tool surface covers the core ChimeraX lifecycle: starting/stopping, opening/closing models, running commands, saving/opening sessions, capturing screenshots, and generating reports. Minor gaps exist, such as no dedicated tool for atomic selection or model information retrieval, but these can be worked around via chimerax_run.