Skip to main content
Glama
N283T

chimerax-mcp-plus

by N283T

chimerax_close

Close molecular models in ChimeraX by specifying model spec; defaults to all models.

Instructions

Close models in ChimeraX.

Args: model_spec: Model specification (default: "all")

Returns: Result of the close command.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
model_specNoall

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description must disclose behavioral traits. It only states the action without noting side effects such as model removal from the session or irreversibility, which are important for a destructive operation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is brief and well-structured with Args and Returns sections. It is front-loaded with the core action and avoids unnecessary verbosity, though it could be more informative while maintaining conciseness.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite the tool's simplicity and the presence of an output schema, the description lacks essential context about model_spec usage and potential side effects. It is not complete enough for an agent to invoke the tool reliably without additional inference.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, and the description only repeats the parameter name and default from the schema. It does not explain valid values or formats for model_spec (e.g., 'all', '#1', ranges), leaving the agent with insufficient information.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('close') and resource ('models in ChimeraX'), making the tool's purpose unambiguous. It clearly distinguishes from sibling tools like chimerax_stop, which likely targets a different resource.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus alternatives. There is no mention of scenarios where this should be preferred over chimerax_stop, chimerax_reset, or other related tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/N283T/chimerax-mcp-plus'

If you have feedback or need assistance with the MCP directory API, please join our Discord server