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N283T

chimerax-mcp-plus

by N283T

chimerax_guide

Learn the recommended workflow for AI clients using ChimeraX MCP, including how to start, inspect, and control ChimeraX without direct shell launches.

Instructions

Return the recommended workflow for AI clients using ChimeraX MCP.

Call this before operating ChimeraX from an AI client. It describes how to avoid bypassing the MCP server with direct shell launches and how to start, inspect, and control ChimeraX through MCP tools.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are present, so the description carries the full burden. It discloses the tool's behavioral role (returning workflow guidance), its content (how to avoid direct shell launches, how to start/inspect/control ChimeraX), and implies it is a safe, read-only informational tool. This is adequate for a guide tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences long, front-loaded with the primary action, and every clause adds value. It avoids unnecessary detail and is perfectly scoped for a guide tool.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The tool has an output schema, so the description needn't explain return values. It covers the essential context: when to call, why it matters (avoiding MCP bypass), and what topics the workflow covers. This is complete for a no-parameter guide tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has zero parameters, so the baseline is 4. The description appropriately makes no attempt to document parameters, and no parameter semantics are needed.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description opens with a clear verb and resource: 'Return the recommended workflow for AI clients using ChimeraX MCP.' It specifies the tool's exact role and clearly differentiates it from siblings that perform actual ChimeraX operations (start, stop, open, etc.).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides explicit when-to-use guidance: 'Call this before operating ChimeraX from an AI client.' It doesn't name alternatives or exclusions, but as a foundational meta-guide with no sibling counterpart, this is sufficient.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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