PDB MCP Server
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Capabilities
Server capabilities have not been inspected yet.
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| search_structures | Search PDB database for protein structures by keyword, protein name, or PDB ID |
| get_structure_info | Get detailed information for a specific PDB structure |
| download_structure | Download structure coordinates in various formats |
| search_by_uniprot | Find PDB structures associated with a UniProt accession |
| get_structure_quality | Get structure quality metrics and validation data |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
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