Skip to main content
Glama
Alierkn

vmd-mcp

by Alierkn
OverviewSchemaSourceRelated ServersDiscussionsAdmin
Python
Local

Related Servers

Alternatives to vmd-mcp

No user-submitted related servers found.

    Related Servers

    • vmd-mcp

      OmarArias-Gaguancela
      F
      license
      Not graded
      quality
      D
      maintenance
      Enables control of VMD2 for molecular dynamics analysis through natural language, allowing users to load structures, set representations, measure distances, compute RMSD, and render images without Tcl scripting.
      6
      -

    • vmd-hydrate-mcp

      wjgoarxiv
      A
      license
      A
      quality
      C
      maintenance
      Drive VMD from any LLM — render GROMACS/LAMMPS trajectories and analyze clathrate-hydrate cages through the Model Context Protocol.
      17
      MIT

    • chimerax-mcp-plus

      N283T
      A
      license
      B
      quality
      C
      maintenance
      MCP server for controlling UCSF ChimeraX molecular visualization software, enabling command execution, screenshots, structure analysis reports, and session management.
      27
      2
      MIT

    • pymol-mcp

      wjgoarxiv
      A
      license
      B
      quality
      B
      maintenance
      Headless PyMOL for molecular visualization, GROMACS/LAMMPS MD trajectories, and clathrate-hydrate cage analysis: H-bond networks, F3/F4 order parameters, and TRACE cage perception + occupancy.
      32
      MIT

    • resinsight

      hnil
      A
      license
      Not graded
      quality
      B
      maintenance
      Enables MCP clients to watch and drive a running ResInsight, query reservoir simulation models, and render pictures and plots without touching the GUI.
      GPL 3.0
    Deploy Server
    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    TDQS

    A3.6/5.0

    Scored across 12 tools

    Disambiguation5/5

    Each tool has a clearly distinct purpose: contacts for atom pairs, count_atoms for counting, distance for center distance, molecule_info for summary, radius_of_gyration for RG, render_image/image renderings, rmsd/rmsf for structural alignment, run_tcl for arbitrary scripts, sasa for surface area, and vmd_info for version. No two tools have overlapping functionality.

    Naming Consistency4/5

    All names use lowercase underscores. Some are single nouns (contacts, distance, rmsd, rmsf, sasa) while others are verb_noun (count_atoms, render_image, render_preset, run_tcl). This is mildly inconsistent but still readable and predictable.

    Tool Count5/5

    With 12 tools, the set covers a wide range of common VMD analyses (distance, RMSD, RMSF, SASA, contacts, radius of gyration, rendering) without being overwhelming. The count is appropriate for the domain.

    Completeness4/5

    The tools cover core analysis tasks (geometry, structural alignment, surface area, rendering, counting, contacts). Missing explicit tools for angles/dihedrals or hydrogen bonds, but the run_tcl fallback allows arbitrary scripts, filling most gaps.

    Maintenance

    ActivityInactive
    ResponsivenessNo issues

    Resources