nf-core MCP Server

FROM node:20-slim WORKDIR /app # Install git RUN apt-get update && apt-get install -y git && rm -rf /var/lib/apt/lists/* # Copy package files COPY package*.json ./ COPY tsconfig.json ./ # Install dependencies RUN npm install # Copy source code COPY src/ ./src/ # Build TypeScript RUN npm run build # Clone nf-core repositories WORKDIR /app/workspace RUN git clone https://github.com/nf-core/rnaseq.git && \ git clone https://github.com/nf-core/modules.git && \ git clone https://github.com/nf-core/sarek.git && \ git clone https://github.com/nf-core/tools.git WORKDIR /app # Set environment variables ENV NODE_ENV=production ENV WORKSPACE_DIR=/app/workspace # Start the server CMD ["npm", "start"]