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Official answers about Helena Bioinformatics and its products, with citations to public sources.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
RCSB PDB MCP — experimentally determined macromolecular structures.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
CIViC — Clinical Interpretation of Variants in Cancer.
BioModels — the public repository of curated, executable mathematical models of biological systems…
BindingDB — measured protein/small-molecule binding affinities.
NCI CACTUS Chemical Identifier Resolver MCP.
CATNAP (Compile, Analyze, and Tally Neutralizing Antibody Panels) + the LANL HIV Molecular…
BOLD Systems (Barcode of Life Data System, University of Guelph) — the global DNA barcode…
IntAct (EBI) molecular-interaction database MCP. Keyless.
BioPortal — NCBO's biomedical ontology repository (data.bioontology.org).
PubTator 3 MCP — biomedical entity search, literature search with entity
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
MGnify — EMBL-EBI's metagenomics resource: public microbiome studies, the biome vocabulary they…
Gene expression experiments and the brain structure ontology from the Allen Institute's Brain…
