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Official answers about Helena Bioinformatics and its products, with citations to public sources.
UCSC Genome Browser REST API — reference genome assemblies for ~250 species, the annotation tracks…
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
QuickGO (EBI) MCP — Gene Ontology browser.
UniProt MCP — protein sequence + function database.
IntAct (EBI) molecular-interaction database MCP. Keyless.
Rhea MCP — expert-curated database of biochemical reactions.
PubTator 3 MCP — biomedical entity search, literature search with entity highlighting, and…
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository. Keyless. Wraps the public…
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
SGD (Saccharomyces Genome Database) MCP.
NCBI Datasets — the US National Library of Medicine's genome, gene and taxonomy reference service…
NCI Thesaurus concepts and the other cancer-research vocabularies served by NCI Enterprise…
Human Protein Atlas (HPA) MCP — keyless.
KEGG REST MCP — Kyoto Encyclopedia of Genes and Genomes.
UMLS MCP — wraps the NLM UMLS Terminology Services REST API (uts-ws.nlm.nih.gov/rest)
PDBe (Protein Data Bank in Europe, EBI) MCP.
MyVariant.info MCP. Aggregated human genetic-variant annotation: dbSNP, ClinVar clinical…
Mondo — condition-string resolver onto the Mondo Disease Ontology.
RCSB PDB MCP — experimentally determined macromolecular structures.
g:Profiler (University of Tartu) — functional enrichment analysis for a gene list against GO…
European Nucleotide Archive (ENA) — EMBL-EBI's public record of raw sequencing runs, assemblies…
dbSNP refSNP records and HGVS/SPDI/rsID normalization for human genetic variants, from NCBI…
MGnify — EMBL-EBI's metagenomics resource: public microbiome studies, the biome vocabulary they…
MetaboLights MCP — EBI's metabolomics study repository.
InterPro MCP (EBI) — protein family / domain / functional-site classification.
CATNAP (Compile, Analyze, and Tally Neutralizing Antibody Panels) + the LANL HIV Molecular…
Monarch Initiative MCP — biomedical knowledge graph.